.ci/online/Dockerfile

+ARG TAG=12-fair202211.4-rocm5.4
+ARG REGISTRY=hub.cbm.gsi.de/computing/images/online
+
+FROM ${REGISTRY}/dev:${TAG} as build
+  ARG SOURCE_DIR=/opt/cbm/src
+  WORKDIR ${SOURCE_DIR}
+  # Kaniko doesn't support RUN --mount, so we have to copy the source code instead
+  COPY . .
+  RUN .ci/online/scripts/install.sh
+
+FROM ${REGISTRY}/runtime:${TAG}
+  ARG CBMROOT_PATH=/opt/cbm/cbmroot
+  ARG FAIRSOFT_PATH=/opt/cbm/fairsoft
+  COPY --from=build ${CBMROOT_PATH}/bin ${CBMROOT_PATH}/bin
+  COPY --from=build ${CBMROOT_PATH}/lib/*.so ${CBMROOT_PATH}/lib/
+  # FIXME HACK FOR DC OCT 23
+  COPY --from=build ${FAIRSOFT_PATH}/lib/libGenVector.so ${FAIRSOFT_PATH}/lib/.
+  COPY --from=build ${FAIRSOFT_PATH}/lib/libGenVector.so.6.26 ${FAIRSOFT_PATH}/lib/.
+  COPY --from=build ${FAIRSOFT_PATH}/lib/libGenVector.so.6.26.10 ${FAIRSOFT_PATH}/lib/.
+  COPY --from=build ${FAIRSOFT_PATH}/lib/libCore.so ${FAIRSOFT_PATH}/lib/.
+  COPY --from=build ${FAIRSOFT_PATH}/lib/libCore.so.6.26 ${FAIRSOFT_PATH}/lib/.
+  COPY --from=build ${FAIRSOFT_PATH}/lib/libCore.so.6.26.10 ${FAIRSOFT_PATH}/lib/.
+
+  ENV LD_LIBRARY_PATH=${CBMROOT_PATH}/lib:${FAIRSOFT_PATH}/lib:/opt/rocm/lib:${LD_LIBRARY_PATH}
+  ENV PATH=${CBMROOT_PATH}/bin:${PATH}
+  CMD ["cbmreco"]

.ci/online/DockerfileBuild

+FROM gcr.io/kaniko-project/executor:v1.16.0-debug
+    ARG USERNAME="username"
+    ARG PASSWORD="your_password"
+    ARG REGISTRY="hub.cbm.gsi.de"
+    ARG IMAGE="${REGISTRY}/computing/cbmroot/cbm_online"
+    ARG TAG="${USER}-debug"
+    RUN mkdir -p /kaniko/.docker
+    RUN echo "{\"auths\":{\"${REGISTRY}\":{\"username\":\"${USERNAME}\",\"password\":\"${PASSWORD}\"}}}" > /kaniko/.docker/config.json
+    # TODO: Mount CbmRoot source instead of copying it into the container (-> same with authentification...)
+    COPY . /workspace
+    ENV IMAGE=${IMAGE}
+    ENV TAG=${TAG}
+    ENTRYPOINT ["/bin/sh" , "-xc", "/kaniko/executor --context dir:///workspace --dockerfile /workspace/algo/containers/cbm_online/Dockerfile --destination $IMAGE:$TAG"]

.ci/online/make_build_image.sh

+#!/bin/bash
+
+set -e
+
+user="$1"
+password="$2"
+
+script=$(readlink -f "$0")
+
+function check_arg() {
+    if [ -z "$1" ]; then
+        echo "Error: No $2 specified."
+        echo "Usage: $script <user> <password>"
+        exit 1
+    fi
+}
+
+check_arg "$user" "user"
+check_arg "$password" "password"
+
+# Set tag as optional third argument
+if [ -z "$3" ]; then
+    tag="$user-debug"
+else
+    tag="$3"
+fi
+
+# This script must be run from the CbmRoot top level directory.
+# Check for .git, .clang-format, and .gitlab-ci.yml
+if [ ! -d .git ] || [ ! -f .clang-format ] || [ ! -f .gitlab-ci.yml ]; then
+    echo "Error: This script must be run from the CbmRoot top level directory."
+    exit 1
+fi
+
+registry="hub.cbm.gsi.de/computing/cbmroot"
+image="cbm_online"
+
+build_args=" \
+    --build-arg="USERNAME=$user" \
+    --build-arg="PASSWORD=$password" \
+    --build-arg="TAG=$tag" \
+"
+dockerfile="algo/containers/cbm_online/DockerfileBuild"
+docker build --progress plain $build_args -f $dockerfile -t cbm_online_builder .

.ci/online/scripts/install.sh

+#!/bin/bash
+
+set -e
+
+srcdir=cbmroot
+build_type=RelWithDebInfo
+install_prefix=/opt/cbm/cbmroot
+fairsoft_path=/opt/cbm/fairsoft
+enable_hip=ON
+rocm_root=/opt/rocm
+hip_archs="gfx906;gfx908" # MI50;MI100
+n_jobs=16
+
+cmake_args="-DCMAKE_INSTALL_PREFIX=$install_prefix \
+    -DCMAKE_BUILD_TYPE=$build_type \
+    -DSIMPATH=$fairsoft_path \
+    -DXPU_ENABLE_HIP=$enable_hip \
+    -DXPU_ROCM_ROOT=$rocm_root \
+    -DXPU_HIP_ARCH=$hip_archs \
+"
+
+ln -s ../cmake algo/cmake
+cmake -S algo -B build $cmake_args
+cmake --build build -j$n_jobs --target install

.ci/online/test_run.sh

+#! /bin/bash
+
+set -e
+
+IMAGE=hub.cbm.gsi.de/fweig/containers/cbm_online:online-container
+DOCKER_FLAGS=" \
+    --rm \
+    -it \
+    --mount type=bind,source=$HOME/cbm/params,target=/opt/cbm/params \
+    --mount type=bind,source=/home/cbmdata/mcbm22/2391,target=/opt/cbm/data \
+"
+
+CMD="cbmreco"
+CMD_FLAGS=" \
+    -p /opt/cbm/params \
+    -i /opt/cbm/data/2391_node8_1_0000.tsa \
+    -n 1 \
+    --omp 1 \
+"
+
+docker run $DOCKER_FLAGS $IMAGE $CMD $CMD_FLAGS
+# docker run $DOCKER_FLAGS $IMAGE ls -l /opt/cbm/data

.ci/online/test_run_gpu.sh

+#! /bin/bash
+
+set -e
+
+IMAGE=hub.cbm.gsi.de/fweig/containers/cbm_online:online-container
+DOCKER_FLAGS=" \
+    --rm \
+    -it \
+    --mount type=bind,source=$HOME/cbm/params,target=/opt/cbm/params \
+    --mount type=bind,source=/home/cbmdata/mcbm22/2391,target=/opt/cbm/data \
+    --device=/dev/kfd \
+    --device=/dev/dri \
+    --security-opt seccomp=unconfined \
+    --group-add video
+"
+
+CMD="cbmreco"
+CMD_FLAGS=" \
+    -p /opt/cbm/params \
+    -i /opt/cbm/data/2391_node8_1_0000.tsa \
+    -n 1 \
+    --omp 1\
+    -l info \
+    -d hip1 \
+"
+# CMD=xpuinfo
+# CMD_FLAGS=
+
+docker run $DOCKER_FLAGS $IMAGE $CMD $CMD_FLAGS
+# docker run $DOCKER_FLAGS $IMAGE ls -l /opt/cbm/data

.clang-format

 ---
-AccessModifierOffset: -2
+AccessModifierOffset: -1
 
 AlignAfterOpenBracket: Align
 AlignConsecutiveAssignments: true
@@ -14,11 +14,11 @@ AllowAllArgumentsOnNextLine: false
 AllowAllConstructorInitializersOnNextLine: false
 AllowAllParametersOfDeclarationOnNextLine: false
 
-AllowShortBlocksOnASingleLine: Always
+AllowShortBlocksOnASingleLine: Never
 AllowShortCaseLabelsOnASingleLine: true
 AllowShortEnumsOnASingleLine: false
 AllowShortFunctionsOnASingleLine: All
-AllowShortIfStatementsOnASingleLine: Always
+AllowShortIfStatementsOnASingleLine: WithoutElse
 AllowShortLambdasOnASingleLine: All
 AllowShortLoopsOnASingleLine: false
 
@@ -80,8 +80,14 @@ IncludeCategories:
     Priority:        1
   - Regex:           '^("|<).*/Cbm'
     Priority:        1
+  - Regex:          '".*"'
+    Priority:        1
   - Regex:           '^("|<).*slice'
     Priority:        2
+  - Regex:           '^("|<)Monitor.hpp'
+    Priority:        2
+  - Regex:           '^("|<)System.hpp'
+    Priority:        2
   - Regex:           '^("|<)Fair'
     Priority:        3
   - Regex:           '^("|<)Logger.h'
@@ -92,6 +98,8 @@ IncludeCategories:
     Priority:        4
   - Regex:           '^("|<)boost'
     Priority:        5
+  - Regex:           '^<.*[^\.]h>'
+    Priority:        6
   - Regex:           '^<.*[^\.h]>'
     Priority:        6
   - Regex:           '^<.*>'
@@ -126,7 +134,7 @@ SpaceAfterCStyleCast: true
 #SpaceAfterLogicalNot: true
 SpaceAfterTemplateKeyword: false
 SpaceBeforeAssignmentOperators: true
-SpaceBeforeCpp11BracedList: true
+SpaceBeforeCpp11BracedList: false
 SpaceBeforeCtorInitializerColon: true
 SpaceBeforeInheritanceColon: true
 SpaceBeforeParens: ControlStatements
@@ -142,6 +150,9 @@ SpacesInContainerLiterals: false
 SpacesInParentheses: false
 SpacesInSquareBrackets: false
 
+WhitespaceSensitiveMacros: ['CBM_ENUM_DICT', 'CBM_YAML_PROPERTIES']
+StatementMacros: ['CBM_PARALLEL_FOR']
+
 Standard: c++11
 
 TabWidth: 8

.clang-tidy

+Checks:          '-*,modernize-deprecated-headers'
+WarningsAsErrors: ''
+HeaderFilterRegex: '.*'
+AnalyzeTemporaryDtors: false
+FormatStyle:     file
+CheckOptions:
+  - key:             modernize-deprecated-headers.CheckHeaderFile
+    value:           'true'
+...

.dockerignore

+.git
+.vscode
+
+/geometry
+/input
+/parameters
+/build
+/algo/external

.gitignore

@@ -5,10 +5,29 @@
 /geometry
 /input
 /parameters
+/qa_data
 /build
+/algo/external
 
 # Comment some single files
 Dart*.cfg
 
 # gdb Crash dumps
 **/core_dump_*
+
+# Git rebase backoup files
+**/*.orig
+
+# IDEs
+.vscode
+.cache
+
+# Housekeeping
+*~
+.*
+!.gitignore
+!.gitlab-ci.yml
+!.dockerignore                          
+!.clang-format             
+!.clang-tidy                
+!.ci/

CODEOWNERS

@@ -10,42 +10,45 @@
 /fles/  @f.uhlig @p.-a.loizeau
 /macro/ @f.uhlig @p.-a.loizeau
 
-/macro/C2F/      @i.selyuzhenkov
-/macro/analysis/ @i.selyuzhenkov
-/macro/KF/       @se.gorbunov @v.akishina
+/macro/C2F/      @a.andronic @k.piasecki
+/macro/analysis/ @a.andronic @k.piasecki
+/macro/KF/       @se.gorbunov
 
 # Core
 /core/             @f.uhlig @v.friese @p.-a.loizeau
-/core/qa/          @se.gorbunov
+/core/qa/          @se.gorbunov @s.zharko
 /core/data/test/   @f.uhlig
 /core/data/raw/    @p.-a.loizeau
-/core/base/utils/  @f.uhlig @s.lebedev
-/core/base/report/ @s.lebedev
-/core/base/draw/   @s.lebedev
+/core/base/utils/  @f.uhlig
+/core/base/report/ @f.uhlig
+/core/base/draw/   @f.uhlig
+
+# Algo
+/algo/ @d.smith @fweig
 
 # Simulation
 /sim/                    @f.uhlig @v.friese @p.-a.loizeau
-/sim/transport/geosetup/ @e.lavrik
+#/sim/transport/geosetup/ @e.lavrik
 
 # Reco
 /reco/              @f.uhlig @v.friese @p.-a.loizeau
-/reco/littrack/     @s.lebedev @andrey.lebedev
-/reco/L1/           @se.gorbunov @v.akishina
+/reco/littrack/     @se.gorbunov
+/reco/L1/           @se.gorbunov @s.zharko
 /reco/eventbuilder/ @d.smith
-/reco/KF/           @se.gorbunov @v.akishina
+/reco/KF/           @se.gorbunov @s.zharko
 
 # Analysis
-/analysis/                                 @i.selyuzhenkov
+/analysis/                                 @a.andronic @k.piasecki
 /analysis/PWGC2F/femtoscopy/               @wielanek_AT_if.pw.edu.pl
-/analysis/common/                          @i.selyuzhenkov
-/analysis/PWGHAD/                          @i.selyuzhenkov
-/analysis/PWGCHA/                          @i.selyuzhenkov
-/analysis/PWGDIL/                          @i.selyuzhenkov
+/analysis/common/                          @a.andronic @k.piasecki
+/analysis/PWGHAD/                          @a.andronic @k.piasecki
+/analysis/PWGCHA/                          @a.andronic @k.piasecki
+/analysis/PWGDIL/                          @a.andronic @k.piasecki
 /analysis/PWGDIL/dielectron/pi0eta/        @c.pauly
 /analysis/PWGDIL/dielectron/papaframework/ @a_meye37_AT_uni-muenster.de
-/analysis/PWGDIL/dielectron/lmvm/          @i.selyuzhenkov
+/analysis/PWGDIL/dielectron/lmvm/          @a.andronic @k.piasecki
 /analysis/PWGDIL/dielectron/conversion/    @c.pauly
-/analysis/PWGDIL/dimuon/                   @i.selyuzhenkov
+/analysis/PWGDIL/dimuon/                   @a.andronic @k.piasecki
 
 ## Detectors
 
@@ -56,15 +59,23 @@
 /macro/trd/           @a.bercuci @p.kaehler
 /sim/detectors/trd/   @a.bercuci @p.kaehler
 /reco/detectors/trd/  @a.bercuci @p.kaehler
+/algo/detectors/trd/  @a.bercuci @p.kaehler
 
 # PSD
-/analysis/detectors/psd/ @karpushkin_AT_inr.ru
-/core/data/psd/          @karpushkin_AT_inr.ru
-/core/data/test/psd/     @karpushkin_AT_inr.ru
-/core/detectors/psd/     @karpushkin_AT_inr.ru
-/macro/psd/              @karpushkin_AT_inr.ru
-/sim/detectors/psd/      @karpushkin_AT_inr.ru
-/reco/detectors/psd/     @karpushkin_AT_inr.ru
+/analysis/detectors/psd/ @v.friese
+/core/data/psd/          @v.friese
+/core/data/test/psd/     @v.friese
+/core/detectors/psd/     @v.friese
+/macro/psd/              @v.friese
+/sim/detectors/psd/      @v.friese
+/reco/detectors/psd/     @v.friese
+
+# FSD
+/analysis/detectors/fsd/ @dvorar10_AT_fjfi.cvut.cz
+/core/data/fsd/          @dvorar10_AT_fjfi.cvut.cz
+/core/detectors/fsd/     @dvorar10_AT_fjfi.cvut.cz
+/sim/detectors/fsd/      @dvorar10_AT_fjfi.cvut.cz
+/reco/detectors/fsd/     @dvorar10_AT_fjfi.cvut.cz
 
 # MUCH
 /core/data/much/         @v.singhal
@@ -73,6 +84,8 @@
 /macro/much/             @v.singhal
 /sim/detectors/much/     @v.singhal
 /reco/detectors/much/    @v.singhal
+/algo/detectors/much/    @v.singhal
+/macro/analysis/much/    @v.singhal
 
 # TOF
 /analysis/detectors/tof/ @n.herrmann @i.deppner
@@ -85,14 +98,16 @@
 /reco/detectors/tof/     @n.herrmann @i.deppner
 /MQ/eTOF/                @n.herrmann @i.deppner
 /MQ/hitbuilder/          @n.herrmann @i.deppner
+/algo/detectors/tof/     @n.herrmann @i.deppner
 
 # RICH
-/core/data/rich/      @s.lebedev
-/core/data/test/rich/ @s.lebedev
-/core/detectors/rich/ @s.lebedev
-/macro/rich/          @s.lebedev
-/sim/detectors/rich/  @s.lebedev
-/reco/detectors/rich/ @s.lebedev
+/core/data/rich/      @ma.beyer
+/core/data/test/rich/ @ma.beyer
+/core/detectors/rich/ @ma.beyer
+/macro/rich/          @ma.beyer
+/sim/detectors/rich/  @ma.beyer
+/reco/detectors/rich/ @ma.beyer
+/algo/detectors/rich/ @ma.beyer
 
 # STS
 /analysis/detectors/sts/ @v.friese
@@ -103,8 +118,13 @@
 /sim/detectors/sts/      @v.friese
 /reco/detectors/sts/     @v.friese
 /MQ/sts/                 @v.friese
+/algo/detectors/sts/     @v.friese
+/algo/data/sts/          @v.friese
 
 # MVD
-/core/data/mvd/ @c.muentz @m.deveaux
-/macro/mvd/     @c.muentz @m.deveaux
-/mvd/           @c.muentz @m.deveaux
+/reco/detectors/mvd/     @c.muentz @m.deveaux @j.stroth
+/core/detectors/mvd/     @c.muentz @m.deveaux @j.stroth
+/core/data/mvd/          @c.muentz @m.deveaux @j.stroth
+/analysis/detectors/mvd/ @c.muentz @m.deveaux @j.stroth
+/macro/mvd/              @c.muentz @m.deveaux @j.stroth
+/sim/detectors/mvd/      @c.muentz @m.deveaux @j.stroth

CTestCustom.cmake

@@ -3,8 +3,13 @@
 message(" -- Read CTestCustom.cmake --")
 
 # Maximum size of uploaded test output of failed tests is 100kB
+# or 10MB in case of weekly tests
 # Larger output is cutted
+if(${CBM_TEST_MODEL} MATCHES Weekly)
+  set(CTEST_CUSTOM_MAXIMUM_FAILED_TEST_OUTPUT_SIZE "10240000")
+else()
   set(CTEST_CUSTOM_MAXIMUM_FAILED_TEST_OUTPUT_SIZE "102400")
+endif()
 
 # Maximum size of uploaded test output of passed tests is 1kB
 # Larger output is cutted

CbmRoot_test.cmake

+# Check if cmake has the required version
+# Since flesnet requires 3.14.0 we should be consistent while we
+# build it in the CbmRoot context
+cmake_minimum_required(VERSION 3.14.0 FATAL_ERROR)
+cmake_policy(VERSION 3.14...3.23)
+
 Set(CTEST_SOURCE_DIRECTORY $ENV{SOURCEDIR})
 Set(CTEST_BINARY_DIRECTORY $ENV{BUILDDIR})
 Set(CTEST_SITE $ENV{SITE})
@@ -5,6 +11,7 @@ Set(CTEST_BUILD_NAME $ENV{LABEL})
 Set(CTEST_CMAKE_GENERATOR "Unix Makefiles")
 Set(CTEST_PROJECT_NAME "CBMROOT")
 Set(EXTRA_FLAGS $ENV{EXTRA_FLAGS})
+Set(INSTALL_PROJECT $ENV{INSTALL_PROJECT})
 
 if(NOT CBM_TEST_MODEL)
   set(CBM_TEST_MODEL NIGHTLY)
@@ -21,9 +28,13 @@ Set(CTEST_BUILD_COMMAND "${BUILD_COMMAND} -i -k -j$ENV{number_of_processors}")
 # Extract the FairRoot version from fairroot-config
 # The version info is of the form Major.Minor.Patch e.g. 15.11.1 and
 # is stored in the variable FairRoot_VERSION
-Set(CMAKE_MODULE_PATH "${CTEST_SOURCE_DIRECTORY}/cmake/modules" ${CMAKE_MODULE_PATH})
-Include(CbmMacros)
-FairRootVersion()
+#Set(CMAKE_MODULE_PATH "${CTEST_SOURCE_DIRECTORY}/cmake/modules" ${CMAKE_MODULE_PATH})
+#set(FAIRROOTPATH $ENV{FAIRROOTPATH})
+#Include(CbmMacros)
+#FairRootVersion()
+
+message("Compiling with $ENV{number_of_processors} jobs in parallel.")
+message("Testing with $ENV{number_of_processors_for_test} jobs in parallel.")
 
 Set(CTEST_USE_LAUNCHERS 1)
 
@@ -38,14 +49,16 @@ Else()
   set(_CMakeModel ${CBM_TEST_MODEL})
 EndIf()
 
-If(EXTRA_FLAGS)
+If(EXTRA_FLAGS AND INSTALL_PROJECT)
+  Set(CTEST_CONFIGURE_COMMAND " \"${CMAKE_EXECUTABLE_NAME}\" \"-G${CTEST_CMAKE_GENERATOR}\" \"-DCBM_TEST_MODEL=${CBM_TEST_MODEL}\" \"-DCMAKE_BUILD_TYPE=${_BuildType}\" \"-DCTEST_USE_LAUNCHERS=${CTEST_USE_LAUNCHERS}\" \"${EXTRA_FLAGS}\" \"-DCMAKE_INSTALL_PREFIX=${CTEST_SOURCE_DIRECTORY}/install\" \"${CTEST_SOURCE_DIRECTORY}\" ")
+ElseIf(EXTRA_FLAGS)
   Set(CTEST_CONFIGURE_COMMAND " \"${CMAKE_EXECUTABLE_NAME}\" \"-G${CTEST_CMAKE_GENERATOR}\" \"-DCBM_TEST_MODEL=${CBM_TEST_MODEL}\" \"-DCMAKE_BUILD_TYPE=${_BuildType}\" \"-DCTEST_USE_LAUNCHERS=${CTEST_USE_LAUNCHERS}\" \"${EXTRA_FLAGS}\" \"${CTEST_SOURCE_DIRECTORY}\" ")
 Else()
   Set(CTEST_CONFIGURE_COMMAND " \"${CMAKE_EXECUTABLE_NAME}\" \"-G${CTEST_CMAKE_GENERATOR}\" \"-DCBM_TEST_MODEL=${CBM_TEST_MODEL}\" \"-DCMAKE_BUILD_TYPE=${_BuildType}\" \"-DCTEST_USE_LAUNCHERS=${CTEST_USE_LAUNCHERS}\" \"${CTEST_SOURCE_DIRECTORY}\" ")
 EndIf()
 
 #If(${CBM_TEST_MODEL} MATCHES Nightly OR ${CBM_TEST_MODEL} MATCHES Weekly OR ${CBM_TEST_MODEL} MATCHES Profile)
-If(NOT ${_BuildType} MATCHES Experimental)
+If(NOT ${_BuildType} MATCHES EXPERIMENTAL)
 
   Find_Program(GCOV_COMMAND gcov)
   If(GCOV_COMMAND)
@@ -66,8 +79,17 @@ if(${_CMakeModel} MATCHES Continuous)
   endif()
 EndIf()
 
+# The stop time should be a date compatible string without day nor timezone
+# Examples:
+# => CTEST_END_TIME_LIMIT=`date -d "${END_TIME}CET -5minutes" +"%H:%M:%S"`
+# => CTEST_END_TIME_LIMIT=`date -d "now +25minutes" +"%H:%M:%S"`
+unset(stop_time)
+If(DEFINED ENV{CTEST_END_TIME_LIMIT})
+  set(stop_time STOP_TIME "$ENV{CTEST_END_TIME_LIMIT}")
+  message(STATUS " End time for the ctest test runs set to ${stop_time}")
+EndIf()
 
-If(NOT ${_BuildType} MATCHES Experimental)
+If(NOT ${_BuildType} MATCHES EXPERIMENTAL)
   Ctest_Update(SOURCE "${CTEST_SOURCE_DIRECTORY}")
 EndIf()
 
@@ -81,16 +103,10 @@ If(NOT _RETVAL)
              )
 
   If(${_CMakeModel} MATCHES Continuous)
-    If(${CMAKE_VERSION} VERSION_LESS 3.14.0)
-      CTest_Submit(PARTS Update Configure Build)
-    Else()
     CTest_Submit(PARTS Update Configure Build
                  BUILD_ID cdash_build_id
                 )
-    EndIf()
     if(${_NUM_ERROR} GREATER 0)
-      If(${CMAKE_VERSION} VERSION_LESS 3.14.0)
-      Else()
       message(STATUS " ")
       message(STATUS " You can find the produced results on the CDash server")
       message(STATUS " ")
@@ -101,61 +117,73 @@ If(NOT _RETVAL)
               "${CTEST_DROP_METHOD}://${CTEST_DROP_SITE}/viewTest.php?buildid=${cdash_build_id}"
              )
       message(STATUS " ")
-      EndIf()
       Message(STATUS "Build finished with ${_NUM_ERROR} errors")
       message(FATAL_ERROR "Compilation failure")
     endif()
   EndIf()
 
+  If(DEFINED ENV{CI_TEST_STAGE_TOTAL_TIME_LIMIT})
+    # Compute test stage timeout based on current time + limit from environment variable
+    If(DEFINED ENV{CTEST_END_TIME_LIMIT})
+      # If also full DASH run timeout defined, also compare the two and keep the earliest one
+      execute_process (
+        COMMAND scripts/find_citests_ctest_stop_time.sh $ENV{CTEST_END_TIME_LIMIT}
+        OUTPUT_VARIABLE CI_TESTS_TOTAL_END_TIME_DATE
+      )
+    Else()
+      # Else just get the CI jpb timeout
+      execute_process (
+        COMMAND scripts/find_citests_ctest_stop_time.sh
+        OUTPUT_VARIABLE CI_TESTS_TOTAL_END_TIME_DATE
+      )
+    EndIf()
+    set(stop_time STOP_TIME "${CI_TESTS_TOTAL_END_TIME_DATE}")
+    message(STATUS "Due to CI mode, Set end time for the ctest test runs to ${stop_time}")
+  EndIf()
+
   Ctest_Test(BUILD "${CTEST_BINARY_DIRECTORY}"
-             PARALLEL_LEVEL $ENV{number_of_processors}
+             PARALLEL_LEVEL $ENV{number_of_processors_for_test}
              ${repeat}
+             ${stop_time}
              RETURN_VALUE _ctest_test_ret_val
             )
 
   If(${_CMakeModel} MATCHES Continuous)
-    If(${CMAKE_VERSION} VERSION_LESS 3.14.0)
-      CTest_Submit(PARTS Test)
-    Else()
     CTest_Submit(PARTS Test
                  BUILD_ID cdash_build_id
                 )
   EndIf()
-  EndIf()
 
   If(GCOV_COMMAND)
     Ctest_Coverage(BUILD "${CTEST_BINARY_DIRECTORY}")
     If(${_CMakeModel} MATCHES Continuous)
-      If(${CMAKE_VERSION} VERSION_LESS 3.14.0)
-        CTest_Submit(PARTS Coverage)
-      Else()
       CTest_Submit(PARTS Coverage
                    BUILD_ID cdash_build_id
                   )
     EndIf()
   EndIf()
-  EndIf()
 
   Ctest_Upload(FILES ${CTEST_NOTES_FILES})
   If(NOT ${_CMakeModel} MATCHES Continuous)
-    If(${CMAKE_VERSION} VERSION_LESS 3.14.0)
-      Ctest_Submit()
-    Else()
     Ctest_Submit(BUILD_ID cdash_build_id)
   EndIf()
-  EndIf()
 
-  If(EXTRA_FLAGS MATCHES "INSTALL_PREFIX" AND EXTRA_FLAGS MATCHES "CBM_TEST_INSTALL" AND NOT _ctest_test_ret_val)
+  If(EXTRA_FLAGS MATCHES "CBM_TEST_INSTALL" AND NOT _ctest_test_ret_val)
+#  If(EXTRA_FLAGS MATCHES "INSTALL_PREFIX" AND EXTRA_FLAGS MATCHES "CBM_TEST_INSTALL" AND NOT _ctest_test_ret_val)
     Message("Testing Installation")
     execute_process(COMMAND ${BUILD_COMMAND} install -j$ENV{number_of_processors} WORKING_DIRECTORY ${CTEST_BINARY_DIRECTORY}
                     RESULTS_VARIABLE _install_ret_value
                    )
     if (NOT _install_ret_value)
-      execute_process(COMMAND ${CMAKE_EXECUTABLE_NAME} -E rm -R MQ algo analysis core external fles mvd reco sim
+      message("executing test suite in ${CTEST_BINARY_DIRECTORY}/install with source folder available")
+      execute_process(COMMAND ${CTEST_SOURCE_DIRECTORY}/cmake/scripts/execute_installation_test.sh ${CTEST_SOURCE_DIRECTORY}/install
+                      RESULTS_VARIABLE _install_ret_value
+                     )
+      execute_process(COMMAND ${CMAKE_EXECUTABLE_NAME} -E rm -R build MQ algo analysis core external fles reco sim
                       WORKING_DIRECTORY ${CTEST_SOURCE_DIRECTORY}
                      )
-      message("executing test suite in ${CTEST_BINARY_DIRECTORY}/install")
-      execute_process(COMMAND ${CTEST_SOURCE_DIRECTORY}/cmake/scripts/execute_installation_test.sh ${CTEST_BINARY_DIRECTORY}/install
+      message("executing test suite in ${CTEST_BINARY_DIRECTORY}/install wihout source folder available")
+      execute_process(COMMAND ${CTEST_SOURCE_DIRECTORY}/cmake/scripts/execute_installation_test.sh ${CTEST_SOURCE_DIRECTORY}/install
                       RESULTS_VARIABLE _install_ret_value
                      )
     endif()
@@ -164,10 +192,11 @@ If(NOT _RETVAL)
      set(_install_ret_value false)
   EndIf()
 
+  Message("_ctest_test_ret_val: ${_ctest_test_ret_val}")
+  Message("_install_ret_value: ${_install_ret_value}")
+
   # Pipeline should fail also in case of failed tests
   if (_ctest_test_ret_val OR _install_ret_value)
-    If(${CMAKE_VERSION} VERSION_LESS 3.14.0)
-    Else()
     message(STATUS " ")
     message(STATUS " You can find the produced results on the CDash server")
     message(STATUS " ")
@@ -178,20 +207,13 @@ If(NOT _RETVAL)
             "${CTEST_DROP_METHOD}://${CTEST_DROP_SITE}/viewTest.php?buildid=${cdash_build_id}"
            )
     message(STATUS " ")
-    EndIf()
     Message(FATAL_ERROR "Some tests failed.")
   endif()
 
-Else()
-  If(${CMAKE_VERSION} VERSION_LESS "3.14.0")
-    Ctest_Submit()
 Else()
   CTest_Submit(BUILD_ID cdash_build_id)
 EndIf()
-EndIf()
 
-If(${CMAKE_VERSION} VERSION_LESS 3.14.0)
-Else()
 message(STATUS " ")
 message(STATUS " You can find the produced results on the CDash server")
 message(STATUS " ")
@@ -202,4 +224,3 @@ Else()
         "${CTEST_DROP_METHOD}://${CTEST_DROP_SITE}/viewTest.php?buildid=${cdash_build_id}"
        )
 message(STATUS " ")
-EndIf()

Dart.sh

@@ -119,15 +119,22 @@ then
   fi
 fi
 
+if [ -z $NCPU4TEST ]; then
+  export number_of_processors_for_test=$number_of_processors
+else
+  export number_of_processors_for_test=$NCPU4TEST
+fi
+
 echo "************************"
 date
 echo "LABEL: " $LABEL
 echo "SITE: " $SITE
 echo "Model: " ${ctest_model}
-echo "Nr. of processes: " $number_of_processors
+echo "Nr. of processes for build: " $number_of_processors
+echo "Nr. of processes for test: " $number_of_processors_for_test
 echo "************************"
 
 cd $SOURCEDIR
 
-ctest -S $SOURCEDIR/CbmRoot_test.cmake -V --VV -DCBM_TEST_MODEL=${ctest_model}
+ctest -S $SOURCEDIR/CbmRoot_test.cmake -V -DCBM_TEST_MODEL=${ctest_model}
 #ctest -S $SOURCEDIR/CbmRoot_test.cmake -V --VV

MQ/base/CMakeLists.txt

 set(INCLUDE_DIRECTORIES
   ${CMAKE_CURRENT_SOURCE_DIR}
-    ${CMAKE_SOURCE_DIR}/MQ/base
   )
 
-Set(SYSTEM_INCLUDE_DIRECTORIES
-    ${SYSTEM_INCLUDE_DIRECTORIES}
-    ${FAIRMQ_INCLUDE_DIR}
-)
-
-include_directories(${INCLUDE_DIRECTORIES})
-include_directories(SYSTEM ${SYSTEM_INCLUDE_DIRECTORIES})
-
-set(LINK_DIRECTORIES
-  ${FAIRMQ_LIBRARY_DIR}
-)
-
-link_directories(${LINK_DIRECTORIES})
-
-set(FAIR_LIBS
-  FairMQ
-)
-
-If(FAIRLOGGER_FOUND)
-  set(FAIR_LIBS
-      ${FAIR_LIBS}
-      FairLogger
-     )
-EndIf()
-
 set(SRCS
   CbmMQChannels.cxx
   )
 
-Set(LIBRARY_NAME CbmMQBase)
-Set(DEPENDENCIES
-    ${FAIR_LIBS}
+set(LIBRARY_NAME CbmMQBase)
+set(PUBLIC_DEPENDENCIES
+  FairMQ::FairMQ
+  )
+
+set(INTERFACE_DEPENDENCIES
+  ROOT::Net
   )
 
-GENERATE_LIBRARY()
+generate_cbm_library()

MQ/histoServer/CMakeLists.txt

@@ -6,87 +6,49 @@
  #                  copied verbatim in the file "LICENSE"                       #
  ################################################################################
 
-Set(INCLUDE_DIRECTORIES
+set(INCLUDE_DIRECTORIES
   ${CMAKE_CURRENT_SOURCE_DIR}
-  ${CBMROOT_SOURCE_DIR}/fles/flestools
 )
 
-Set(SYSTEM_INCLUDE_DIRECTORIES
-    ${SYSTEM_INCLUDE_DIRECTORIES}
-    ${Boost_INCLUDE_DIR}
-    ${FAIRROOT_INCLUDE_DIR}
-    ${FAIRMQ_INCLUDE_DIR}
-    ${FAIRMQ_INCLUDE_DIR}/options
-    ${FAIRLOGGER_INCLUDE_DIR}
-)
-
-Include_Directories(${INCLUDE_DIRECTORIES})
-Include_Directories(SYSTEM ${SYSTEM_INCLUDE_DIRECTORIES})
-
-Set(LINK_DIRECTORIES
-  ${Boost_LIBRARY_DIRS}
-  ${FAIRROOT_LIBRARY_DIR}
-  ${ROOT_LIBRARY_DIR}
-)
-
-Link_Directories(${LINK_DIRECTORIES})
-
-set(FAIR_LIBS
-  FairMQ
-)
-
-If(FAIRLOGGER_FOUND)
-  set(FAIR_LIBS
-    ${FAIR_LIBS}
-    FairLogger
-  )
-EndIf()
-
-
-Set(BOOST_LIBS
-  ${Boost_SYSTEM_LIBRARY}
-  ${Boost_SERIALIZATION_LIBRARY}
-  ${Boost_PROGRAM_OPTIONS_LIBRARY}
-)
 If(UNIX AND NOT APPLE)
   List(APPEND BOOST_LIBS pthread)
 EndIf()
 
-# Dependencies common to all executables
-set(DEPENDENCIES_ALL
-  ${DEPENDENCIES}
-  ${FAIR_LIBS}
-  ${BOOST_LIBS}
-)
-
 # Set the install path within the build directory
 set(EXECUTABLE_OUTPUT_PATH "${EXECUTABLE_OUTPUT_PATH}/MQ/histogramServer")
 # Set the install path within the installation directory
 set(BIN_DESTINATION bin/MQ/histogramServer)
 
+
+set(PUBLIC_DEPS
+  ROOT::Core
+  ROOT::RHTTP
+  )
+
+set(PRIVATE_DEPS
+  CbmFlibFlesTools
+  FairRoot::Base
+  FairMQ::FairMQ
+  ROOT::Gpad
+  ROOT::Hist
+  ROOT::Net
+  ROOT::RIO
+  )
+    
 set(EXE_NAME HistoServer)
 set(SRCS CbmHistoServer.cxx runCbmHistoServer.cxx)
-set(DEPENDENCIES
-  ${DEPENDENCIES_ALL}
-  external::fles_ipc
-  Core
-  RIO
-  Net
-  Hist
-  RHTTP
-)
-GENERATE_EXECUTABLE()
+
+set(PUBLIC_DEPENDENCIES ${PUBLIC_DEPS}) 
+set(PRIVATE_DEPENDENCIES ${PRIVATE_DEPS}) 
+set(INTERFACE_DEPENDENCIES ${INTERFACE_DEPS})
+
+generate_cbm_executable()
 
 set(EXE_NAME MqHistoServer)
 set(SRCS CbmMqHistoServer.cxx runCbmMqHistoServer.cxx)
-set(DEPENDENCIES
-  ${DEPENDENCIES_ALL}
-  CbmFlibFlesTools
-  Core
-  RIO
-  Net
-  Hist
-  Gpad
-  RHTTP
-)
-GENERATE_EXECUTABLE()
+
+set(PUBLIC_DEPENDENCIES ${PUBLIC_DEPS}) 
+set(PRIVATE_DEPENDENCIES ${PRIVATE_DEPS}) 
+set(INTERFACE_DEPENDENCIES ${INTERFACE_DEPS})
+
+generate_cbm_executable()

MQ/histoServer/CbmHistoServer.cxx

@@ -45,7 +45,7 @@ void CbmHistoServer::InitTask()
 bool CbmHistoServer::ReceiveData(FairMQMessagePtr& msg, int /*index*/)
 {
   TObject* tempObject = nullptr;
-  Deserialize<RootSerializer>(*msg, tempObject);
+  RootSerializer().Deserialize(*msg, tempObject);
 
   if (TString(tempObject->ClassName()).EqualTo("TObjArray")) {
     std::lock_guard<std::mutex> lk(mtx);

MQ/hitbuilder/CMakeLists.txt

@@ -3,94 +3,52 @@ configure_file(${CMAKE_CURRENT_SOURCE_DIR}/startMQ_Mcbm.sh.in ${CMAKE_BINARY_DIR
 
 set(INCLUDE_DIRECTORIES
     ${CMAKE_CURRENT_SOURCE_DIR}
-    ${CBMDATA_DIR}
-    ${CBMDATA_DIR}/base
-    ${CBMDATA_DIR}/tof
-    ${CBMBASE_DIR}
-    ${CBMDETECTORBASE_DIR}/tof
-    ${CBMROOT_SOURCE_DIR}/MQ/base
     )
 
-Set(SYSTEM_INCLUDE_DIRECTORIES
-    ${SYSTEM_INCLUDE_DIRECTORIES}
-    ${ZeroMQ_INCLUDE_DIR}
-    ${Boost_INCLUDE_DIR}
-    ${FAIRROOT_INCLUDE_DIR}
-    ${FAIRLOGGER_INCLUDE_DIR}
-    ${FAIRMQ_INCLUDE_DIR}
-    ${FAIRMQ_INCLUDE_DIR}/options
-    ${VMC_INCLUDE_DIRS}
-
-    ${FLES_IPC_INCLUDE_DIRECTORY}
-    ${CBMROOT_SOURCE_DIR}/external/cppzmq
-    ${CBMROOT_SOURCE_DIR}/reco/detectors/tof
-)
-
-include_directories(${INCLUDE_DIRECTORIES})
-include_directories(SYSTEM ${SYSTEM_INCLUDE_DIRECTORIES})
-
-set(LINK_DIRECTORIES
-  ${ROOT_LIBRARY_DIR}
-  ${FAIRROOT_LIBRARY_DIR}
-  ${Boost_LIBRARY_DIRS}
-)
-
-link_directories(${LINK_DIRECTORIES})
-
 # Set the install path within the build directory
 set(EXECUTABLE_OUTPUT_PATH "${EXECUTABLE_OUTPUT_PATH}/MQ/hitbuilder")
 # Set the install path within the installation directory
 set(BIN_DESTINATION bin/MQ/hitbuilder)
 
-Set(BOOST_LIBS
-  ${Boost_SYSTEM_LIBRARY}
-  ${Boost_SERIALIZATION_LIBRARY}
-  ${Boost_PROGRAM_OPTIONS_LIBRARY}
-  ${Boost_LOG_LIBRARY}
-)
+
 If(UNIX AND NOT APPLE)
   List(APPEND BOOST_LIBS pthread)
 EndIf()
 
-set(FAIR_LIBS
-  Base
-  ParBase
-  ${FAIRMQ_LIBS}
-)
 
+set(EXE_NAME HitBuilderTof)
+set(SRCS CbmDeviceHitBuilderTof.cxx runHitBuilderTof.cxx)
+set(PUBLIC_DEPENDENCIES
+  CbmData
+  CbmTofBase
+  CbmMQBase
+  FairRoot::Base
+  ROOT::Geom
 
-If(FAIRLOGGER_FOUND)
-  set(FAIR_LIBS
-      ${FAIR_LIBS}
-      FairLogger
   )
-EndIf()
 
-# Dependencies common to all executables
-set(DEPENDENCIES_ALL
-  ${DEPENDENCIES}
-  ${FAIR_LIBS}
-  ${BOOST_LIBS}
+set(PRIVATE_DEPENDENCIES
+  CbmBase
+  CbmTofReco  
+  FairRoot::ParBase
+  FairRoot::Online
+  ROOT::Core
+  ROOT::Graf
+  ROOT::Hist
+  ROOT::MathCore
+  ROOT::Minuit
+  ROOT::Physics
   )
 
-set(EXE_NAME HitBuilderTof)
-set(SRCS CbmDeviceHitBuilderTof.cxx runHitBuilderTof.cxx)
-set(DEPENDENCIES
-  ${DEPENDENCIES_ALL}
-#    external::fles_ipc
-  CbmBase
-  CbmData
-  CbmTofBase
-  Geom
-  Core
-  MathCore
-  Tree
-  Physics
-  RIO
-  Net
-  Hist
+set(INTERFACE_DEPENDENCIES
+  FairMQ::FairMQ
+  external::fles_ipc
+  ROOT::Net
+  ROOT::RIO
+  ROOT::Tree
   )
-GENERATE_EXECUTABLE()
+
+generate_cbm_executable()
 
 # Set the correct variables for the installation
 set(VMCWORKDIR ${CMAKE_INSTALL_PREFIX}/share/cbmroot)