.ci/online/Dockerfile

+ARG TAG=12-fair202211.4-rocm5.4
+ARG REGISTRY=hub.cbm.gsi.de/computing/images/online
+
+FROM ${REGISTRY}/dev:${TAG} as build
+  ARG SOURCE_DIR=/opt/cbm/src
+  WORKDIR ${SOURCE_DIR}
+  # Kaniko doesn't support RUN --mount, so we have to copy the source code instead
+  COPY . .
+  RUN .ci/online/scripts/install.sh
+
+FROM ${REGISTRY}/runtime:${TAG}
+  ARG CBMROOT_PATH=/opt/cbm/cbmroot
+  ARG FAIRSOFT_PATH=/opt/cbm/fairsoft
+  COPY --from=build ${CBMROOT_PATH}/bin ${CBMROOT_PATH}/bin
+  COPY --from=build ${CBMROOT_PATH}/lib/*.so ${CBMROOT_PATH}/lib/
+  # FIXME HACK FOR DC OCT 23
+  COPY --from=build ${FAIRSOFT_PATH}/lib/libGenVector.so ${FAIRSOFT_PATH}/lib/.
+  COPY --from=build ${FAIRSOFT_PATH}/lib/libGenVector.so.6.26 ${FAIRSOFT_PATH}/lib/.
+  COPY --from=build ${FAIRSOFT_PATH}/lib/libGenVector.so.6.26.10 ${FAIRSOFT_PATH}/lib/.
+  COPY --from=build ${FAIRSOFT_PATH}/lib/libCore.so ${FAIRSOFT_PATH}/lib/.
+  COPY --from=build ${FAIRSOFT_PATH}/lib/libCore.so.6.26 ${FAIRSOFT_PATH}/lib/.
+  COPY --from=build ${FAIRSOFT_PATH}/lib/libCore.so.6.26.10 ${FAIRSOFT_PATH}/lib/.
+
+  ENV LD_LIBRARY_PATH=${CBMROOT_PATH}/lib:${FAIRSOFT_PATH}/lib:/opt/rocm/lib:${LD_LIBRARY_PATH}
+  ENV PATH=${CBMROOT_PATH}/bin:${PATH}
+  CMD ["cbmreco"]

.ci/online/DockerfileBuild

+FROM gcr.io/kaniko-project/executor:v1.16.0-debug
+    ARG USERNAME="username"
+    ARG PASSWORD="your_password"
+    ARG REGISTRY="hub.cbm.gsi.de"
+    ARG IMAGE="${REGISTRY}/computing/cbmroot/cbm_online"
+    ARG TAG="${USER}-debug"
+    RUN mkdir -p /kaniko/.docker
+    RUN echo "{\"auths\":{\"${REGISTRY}\":{\"username\":\"${USERNAME}\",\"password\":\"${PASSWORD}\"}}}" > /kaniko/.docker/config.json
+    # TODO: Mount CbmRoot source instead of copying it into the container (-> same with authentification...)
+    COPY . /workspace
+    ENV IMAGE=${IMAGE}
+    ENV TAG=${TAG}
+    ENTRYPOINT ["/bin/sh" , "-xc", "/kaniko/executor --context dir:///workspace --dockerfile /workspace/algo/containers/cbm_online/Dockerfile --destination $IMAGE:$TAG"]

.ci/online/make_build_image.sh

+#!/bin/bash
+
+set -e
+
+user="$1"
+password="$2"
+
+script=$(readlink -f "$0")
+
+function check_arg() {
+    if [ -z "$1" ]; then
+        echo "Error: No $2 specified."
+        echo "Usage: $script <user> <password>"
+        exit 1
+    fi
+}
+
+check_arg "$user" "user"
+check_arg "$password" "password"
+
+# Set tag as optional third argument
+if [ -z "$3" ]; then
+    tag="$user-debug"
+else
+    tag="$3"
+fi
+
+# This script must be run from the CbmRoot top level directory.
+# Check for .git, .clang-format, and .gitlab-ci.yml
+if [ ! -d .git ] || [ ! -f .clang-format ] || [ ! -f .gitlab-ci.yml ]; then
+    echo "Error: This script must be run from the CbmRoot top level directory."
+    exit 1
+fi
+
+registry="hub.cbm.gsi.de/computing/cbmroot"
+image="cbm_online"
+
+build_args=" \
+    --build-arg="USERNAME=$user" \
+    --build-arg="PASSWORD=$password" \
+    --build-arg="TAG=$tag" \
+"
+dockerfile="algo/containers/cbm_online/DockerfileBuild"
+docker build --progress plain $build_args -f $dockerfile -t cbm_online_builder .

.ci/online/scripts/install.sh

+#!/bin/bash
+
+set -e
+
+srcdir=cbmroot
+build_type=RelWithDebInfo
+install_prefix=/opt/cbm/cbmroot
+fairsoft_path=/opt/cbm/fairsoft
+enable_hip=ON
+rocm_root=/opt/rocm
+hip_archs="gfx906;gfx908" # MI50;MI100
+n_jobs=16
+
+cmake_args="-DCMAKE_INSTALL_PREFIX=$install_prefix \
+    -DCMAKE_BUILD_TYPE=$build_type \
+    -DSIMPATH=$fairsoft_path \
+    -DXPU_ENABLE_HIP=$enable_hip \
+    -DXPU_ROCM_ROOT=$rocm_root \
+    -DXPU_HIP_ARCH=$hip_archs \
+"
+
+ln -s ../cmake algo/cmake
+cmake -S algo -B build $cmake_args
+cmake --build build -j$n_jobs --target install

.ci/online/test_run.sh

+#! /bin/bash
+
+set -e
+
+IMAGE=hub.cbm.gsi.de/fweig/containers/cbm_online:online-container
+DOCKER_FLAGS=" \
+    --rm \
+    -it \
+    --mount type=bind,source=$HOME/cbm/params,target=/opt/cbm/params \
+    --mount type=bind,source=/home/cbmdata/mcbm22/2391,target=/opt/cbm/data \
+"
+
+CMD="cbmreco"
+CMD_FLAGS=" \
+    -p /opt/cbm/params \
+    -i /opt/cbm/data/2391_node8_1_0000.tsa \
+    -n 1 \
+    --omp 1 \
+"
+
+docker run $DOCKER_FLAGS $IMAGE $CMD $CMD_FLAGS
+# docker run $DOCKER_FLAGS $IMAGE ls -l /opt/cbm/data

.ci/online/test_run_gpu.sh

+#! /bin/bash
+
+set -e
+
+IMAGE=hub.cbm.gsi.de/fweig/containers/cbm_online:online-container
+DOCKER_FLAGS=" \
+    --rm \
+    -it \
+    --mount type=bind,source=$HOME/cbm/params,target=/opt/cbm/params \
+    --mount type=bind,source=/home/cbmdata/mcbm22/2391,target=/opt/cbm/data \
+    --device=/dev/kfd \
+    --device=/dev/dri \
+    --security-opt seccomp=unconfined \
+    --group-add video
+"
+
+CMD="cbmreco"
+CMD_FLAGS=" \
+    -p /opt/cbm/params \
+    -i /opt/cbm/data/2391_node8_1_0000.tsa \
+    -n 1 \
+    --omp 1\
+    -l info \
+    -d hip1 \
+"
+# CMD=xpuinfo
+# CMD_FLAGS=
+
+docker run $DOCKER_FLAGS $IMAGE $CMD $CMD_FLAGS
+# docker run $DOCKER_FLAGS $IMAGE ls -l /opt/cbm/data

.clang-format

 ---
-AccessModifierOffset: -2
+AccessModifierOffset: -1
 
 AlignAfterOpenBracket: Align
 AlignConsecutiveAssignments: true
@@ -14,11 +14,11 @@ AllowAllArgumentsOnNextLine: false
 AllowAllConstructorInitializersOnNextLine: false
 AllowAllParametersOfDeclarationOnNextLine: false
 
-AllowShortBlocksOnASingleLine: Always
+AllowShortBlocksOnASingleLine: Never
 AllowShortCaseLabelsOnASingleLine: true
 AllowShortEnumsOnASingleLine: false
 AllowShortFunctionsOnASingleLine: All
-AllowShortIfStatementsOnASingleLine: Always
+AllowShortIfStatementsOnASingleLine: WithoutElse
 AllowShortLambdasOnASingleLine: All
 AllowShortLoopsOnASingleLine: false
 
@@ -78,18 +78,28 @@ IncludeBlocks: Regroup
 IncludeCategories:
   - Regex:           '^("|<)Cbm'
     Priority:        1
+  - Regex:           '^("|<).*/Cbm'
+    Priority:        1
+  - Regex:          '".*"'
+    Priority:        1
   - Regex:           '^("|<).*slice'
     Priority:        2
+  - Regex:           '^("|<)Monitor.hpp'
+    Priority:        2
+  - Regex:           '^("|<)System.hpp'
+    Priority:        2
   - Regex:           '^("|<)Fair'
     Priority:        3
   - Regex:           '^("|<)Logger.h'
     Priority:        3
-  - Regex:           '^("|<)T'
+  - Regex:           '^("|<)T.*\.h'
     Priority:        4
-  - Regex:           '^("|<)Rt'
+  - Regex:           '^("|<)Rt.*\.h'
     Priority:        4
   - Regex:           '^("|<)boost'
     Priority:        5
+  - Regex:           '^<.*[^\.]h>'
+    Priority:        6
   - Regex:           '^<.*[^\.h]>'
     Priority:        6
   - Regex:           '^<.*>'
@@ -124,7 +134,7 @@ SpaceAfterCStyleCast: true
 #SpaceAfterLogicalNot: true
 SpaceAfterTemplateKeyword: false
 SpaceBeforeAssignmentOperators: true
-SpaceBeforeCpp11BracedList: true
+SpaceBeforeCpp11BracedList: false
 SpaceBeforeCtorInitializerColon: true
 SpaceBeforeInheritanceColon: true
 SpaceBeforeParens: ControlStatements
@@ -140,6 +150,9 @@ SpacesInContainerLiterals: false
 SpacesInParentheses: false
 SpacesInSquareBrackets: false
 
+WhitespaceSensitiveMacros: ['CBM_ENUM_DICT', 'CBM_YAML_PROPERTIES']
+StatementMacros: ['CBM_PARALLEL_FOR']
+
 Standard: c++11
 
 TabWidth: 8

.clang-tidy

+Checks:          '-*,modernize-deprecated-headers'
+WarningsAsErrors: ''
+HeaderFilterRegex: '.*'
+AnalyzeTemporaryDtors: false
+FormatStyle:     file
+CheckOptions:
+  - key:             modernize-deprecated-headers.CheckHeaderFile
+    value:           'true'
+...

.dockerignore

+.git
+.vscode
+
+/geometry
+/input
+/parameters
+/build
+/algo/external

.gitignore

 # exclude top level directories
 # which are taken from other git repositories
 # The / at the beginning is important, otherwise all directories
-# containing the string are ignored 
+# containing the string are ignored
 /geometry
 /input
 /parameters
+/qa_data
 /build
+/algo/external
 
 # Comment some single files
 Dart*.cfg
+
+# gdb Crash dumps
+**/core_dump_*
+
+# Git rebase backoup files
+**/*.orig
+
+# IDEs
+.vscode

CODEOWNERS

+# Ending a path in a `/` will specify the code owners for every file
+# nested in that directory, on any level
+/          @f.uhlig @v.friese @p.-a.loizeau
+/cmake/    @f.uhlig
+/external/ @f.uhlig
+/scripts/  @f.uhlig @p.-a.loizeau
+
+# Cleanup and proper separation needed
+/MQ/    @f.uhlig @p.-a.loizeau
+/fles/  @f.uhlig @p.-a.loizeau
+/macro/ @f.uhlig @p.-a.loizeau
+
+/macro/C2F/      @a.andronic @k.piasecki
+/macro/analysis/ @a.andronic @k.piasecki
+/macro/KF/       @se.gorbunov
+
+# Core
+/core/             @f.uhlig @v.friese @p.-a.loizeau
+/core/qa/          @se.gorbunov @s.zharko
+/core/data/test/   @f.uhlig
+/core/data/raw/    @p.-a.loizeau
+/core/base/utils/  @f.uhlig
+/core/base/report/ @f.uhlig
+/core/base/draw/   @f.uhlig
+
+# Algo
+/algo/ @d.smith @fweig
+
+# Simulation
+/sim/                    @f.uhlig @v.friese @p.-a.loizeau
+#/sim/transport/geosetup/ @e.lavrik
+
+# Reco
+/reco/              @f.uhlig @v.friese @p.-a.loizeau
+/reco/littrack/     @se.gorbunov
+/reco/L1/           @se.gorbunov @s.zharko
+/reco/eventbuilder/ @d.smith
+/reco/KF/           @se.gorbunov @s.zharko
+
+# Analysis
+/analysis/                                 @a.andronic @k.piasecki
+/analysis/PWGC2F/femtoscopy/               @wielanek_AT_if.pw.edu.pl
+/analysis/common/                          @a.andronic @k.piasecki
+/analysis/PWGHAD/                          @a.andronic @k.piasecki
+/analysis/PWGCHA/                          @a.andronic @k.piasecki
+/analysis/PWGDIL/                          @a.andronic @k.piasecki
+/analysis/PWGDIL/dielectron/pi0eta/        @c.pauly
+/analysis/PWGDIL/dielectron/papaframework/ @a_meye37_AT_uni-muenster.de
+/analysis/PWGDIL/dielectron/lmvm/          @a.andronic @k.piasecki
+/analysis/PWGDIL/dielectron/conversion/    @c.pauly
+/analysis/PWGDIL/dimuon/                   @a.andronic @k.piasecki
+
+## Detectors
+
+# TRD
+/core/data/trd/       @a.bercuci @p.kaehler
+/core/data/test/trd/  @a.bercuci @p.kaehler
+/core/detectors/trd/  @a.bercuci @p.kaehler
+/macro/trd/           @a.bercuci @p.kaehler
+/sim/detectors/trd/   @a.bercuci @p.kaehler
+/reco/detectors/trd/  @a.bercuci @p.kaehler
+/algo/detectors/trd/  @a.bercuci @p.kaehler
+
+# PSD
+/analysis/detectors/psd/ @v.friese
+/core/data/psd/          @v.friese
+/core/data/test/psd/     @v.friese
+/core/detectors/psd/     @v.friese
+/macro/psd/              @v.friese
+/sim/detectors/psd/      @v.friese
+/reco/detectors/psd/     @v.friese
+
+# FSD
+/analysis/detectors/fsd/ @dvorar10_AT_fjfi.cvut.cz
+/core/data/fsd/          @dvorar10_AT_fjfi.cvut.cz
+/core/detectors/fsd/     @dvorar10_AT_fjfi.cvut.cz
+/sim/detectors/fsd/      @dvorar10_AT_fjfi.cvut.cz
+/reco/detectors/fsd/     @dvorar10_AT_fjfi.cvut.cz
+
+# MUCH
+/core/data/much/         @v.singhal
+/core/data/test/much/    @v.singhal
+/core/detectors/much/    @v.singhal
+/macro/much/             @v.singhal
+/sim/detectors/much/     @v.singhal
+/reco/detectors/much/    @v.singhal
+/algo/detectors/much/    @v.singhal
+/macro/analysis/much/    @v.singhal
+
+# TOF
+/analysis/detectors/tof/ @n.herrmann @i.deppner
+/core/data/tof/          @n.herrmann @i.deppner
+/core/data/test/tof/     @n.herrmann @i.deppner
+/core/detectors/tof/     @n.herrmann @i.deppner
+/fles/star2019/          @n.herrmann @i.deppner
+/macro/tof/              @n.herrmann @i.deppner
+/sim/detectors/tof/      @n.herrmann @i.deppner
+/reco/detectors/tof/     @n.herrmann @i.deppner
+/MQ/eTOF/                @n.herrmann @i.deppner
+/MQ/hitbuilder/          @n.herrmann @i.deppner
+/algo/detectors/tof/     @n.herrmann @i.deppner
+
+# RICH
+/core/data/rich/      @ma.beyer
+/core/data/test/rich/ @ma.beyer
+/core/detectors/rich/ @ma.beyer
+/macro/rich/          @ma.beyer
+/sim/detectors/rich/  @ma.beyer
+/reco/detectors/rich/ @ma.beyer
+/algo/detectors/rich/ @ma.beyer
+
+# STS
+/analysis/detectors/sts/ @v.friese
+/core/data/sts/          @v.friese
+/core/data/test/sts/     @v.friese
+/core/detectors/sts/     @v.friese
+/macro/sts/              @v.friese
+/sim/detectors/sts/      @v.friese
+/reco/detectors/sts/     @v.friese
+/MQ/sts/                 @v.friese
+/algo/detectors/sts/     @v.friese
+/algo/data/sts/          @v.friese
+
+# MVD
+/reco/detectors/mvd/     @c.muentz @m.deveaux @j.stroth
+/core/detectors/mvd/     @c.muentz @m.deveaux @j.stroth
+/core/data/mvd/          @c.muentz @m.deveaux @j.stroth
+/analysis/detectors/mvd/ @c.muentz @m.deveaux @j.stroth
+/macro/mvd/              @c.muentz @m.deveaux @j.stroth
+/sim/detectors/mvd/      @c.muentz @m.deveaux @j.stroth

CTestCustom.cmake

@@ -3,8 +3,13 @@
 message(" -- Read CTestCustom.cmake --")
 
 # Maximum size of uploaded test output of failed tests is 100kB
+# or 10MB in case of weekly tests
 # Larger output is cutted
-set(CTEST_CUSTOM_MAXIMUM_FAILED_TEST_OUTPUT_SIZE "102400")
+if(${CBM_TEST_MODEL} MATCHES Weekly)
+  set(CTEST_CUSTOM_MAXIMUM_FAILED_TEST_OUTPUT_SIZE "10240000")
+else()
+  set(CTEST_CUSTOM_MAXIMUM_FAILED_TEST_OUTPUT_SIZE "102400")
+endif()
 
 # Maximum size of uploaded test output of passed tests is 1kB
 # Larger output is cutted
@@ -42,8 +47,8 @@ set(CTEST_CUSTOM_WARNING_EXCEPTION
 
         # -- warnings from our external packages
         "external/flib_dpb"
-#        "external/flib_dpb_20"
         "external/ipc" 
+        "maybe_unused"
         "include/AnalysisTree"
 
         # -- remove intended fall through warnings
@@ -54,6 +59,15 @@ set(CTEST_CUSTOM_WARNING_EXCEPTION
         "CbmDeviceUnpackTofMcbm2018.cxx.*warning: attributes at the beginning of statement are ignored"
         "CbmDeviceUnpackTofMcbm2018.cxx.*warning: this statement may fall through"
         "CbmDeviceUnpackTofMcbm2018.cxx.*note: here"
+        "CbmMcbm2018TofPar.cxx.*warning: attributes at the beginning of statement are ignored"
+        "CbmMcbm2018TofPar.cxx.*warning: this statement may fall through"
+        "CbmMcbm2018TofPar.cxx.*note: here"
+
+        # -- warnings from a feature we want and which is okay
+        "CbmCheckEvents.cxx:86:52"
+
+        # -- warnings about to long function for debugging
+        "variable tracking size limit exceeded"
 
         # -- warnings from structures for HADAQ memory casting
         "struct hadaq::HadTu"
@@ -64,8 +78,10 @@ set(CTEST_CUSTOM_WARNING_EXCEPTION
         # -- warnings from structures for MBS/LMD memory casting
         "struct mbs::Header"
 
-        # -- warnings from my test machine demac006
-        "warning: text-based stub file"
+        # -- warnings from macosx test machines
+        "ld: warning: dylib.*was built for newer macOS version.*than being linked"
+        ".*\\^.*"
+        "warning.*generated."
 
         # -- don't show pragma message warnings
         "Compiling CBM Configuration"

CbmRoot_test.cmake

+# Check if cmake has the required version
+# Since flesnet requires 3.14.0 we should be consistent while we
+# build it in the CbmRoot context
+cmake_minimum_required(VERSION 3.14.0 FATAL_ERROR)
+cmake_policy(VERSION 3.14...3.23)
+
 Set(CTEST_SOURCE_DIRECTORY $ENV{SOURCEDIR})
 Set(CTEST_BINARY_DIRECTORY $ENV{BUILDDIR})
 Set(CTEST_SITE $ENV{SITE})
@@ -5,6 +11,11 @@ Set(CTEST_BUILD_NAME $ENV{LABEL})
 Set(CTEST_CMAKE_GENERATOR "Unix Makefiles")
 Set(CTEST_PROJECT_NAME "CBMROOT")
 Set(EXTRA_FLAGS $ENV{EXTRA_FLAGS})
+Set(INSTALL_PROJECT $ENV{INSTALL_PROJECT})
+
+if(NOT CBM_TEST_MODEL)
+  set(CBM_TEST_MODEL NIGHTLY)
+endif()
 
 include(${CTEST_SOURCE_DIRECTORY}/CTestConfig.cmake)
 Ctest_Read_Custom_Files("${CTEST_SOURCE_DIRECTORY}")
@@ -17,31 +28,37 @@ Set(CTEST_BUILD_COMMAND "${BUILD_COMMAND} -i -k -j$ENV{number_of_processors}")
 # Extract the FairRoot version from fairroot-config
 # The version info is of the form Major.Minor.Patch e.g. 15.11.1 and
 # is stored in the variable FairRoot_VERSION
-Set(CMAKE_MODULE_PATH "${CTEST_SOURCE_DIRECTORY}/cmake/modules" ${CMAKE_MODULE_PATH})
-Include(CbmMacros)
-FairRootVersion()
-
-If(${FairRoot_VERSION} VERSION_LESS 16.0.0)
-  Set(CTEST_USE_LAUNCHERS 0)
-Else()
-  Set(CTEST_USE_LAUNCHERS 1)
-EndIf()
-
-If($ENV{ctest_model} MATCHES Weekly)
-  Set(_Model PROFILE)
-ElseIf($ENV{ctest_model} MATCHES MergeRequest)
-  Set(_Model CONTINUOUS)
+#Set(CMAKE_MODULE_PATH "${CTEST_SOURCE_DIRECTORY}/cmake/modules" ${CMAKE_MODULE_PATH})
+#set(FAIRROOTPATH $ENV{FAIRROOTPATH})
+#Include(CbmMacros)
+#FairRootVersion()
+
+message("Compiling with $ENV{number_of_processors} jobs in parallel.")
+message("Testing with $ENV{number_of_processors_for_test} jobs in parallel.")
+
+Set(CTEST_USE_LAUNCHERS 1)
+
+If(${CBM_TEST_MODEL} MATCHES MergeRequest OR ${CBM_TEST_MODEL} MATCHES Continuous)
+  Set(_BuildType NIGHTLY)
+  Set(_CMakeModel Continuous)
+elseIf(${CBM_TEST_MODEL} MATCHES Weekly OR ${CBM_TEST_MODEL} MATCHES Profile)
+  Set(_BuildType PROFILE)
+  Set(_CMakeModel Nightly)
 Else()
-  String(TOUPPER $ENV{ctest_model} _Model)
+  String(TOUPPER ${CBM_TEST_MODEL} _BuildType)
+  set(_CMakeModel ${CBM_TEST_MODEL})
 EndIf()
 
-If(EXTRA_FLAGS)
-  Set(CTEST_CONFIGURE_COMMAND " \"${CMAKE_EXECUTABLE_NAME}\" \"-G${CTEST_CMAKE_GENERATOR}\" \"-DCMAKE_BUILD_TYPE=${_Model}\" \"-DCTEST_USE_LAUNCHERS=${CTEST_USE_LAUNCHERS}\" \"${EXTRA_FLAGS}\" \"${CTEST_SOURCE_DIRECTORY}\" ")
+If(EXTRA_FLAGS AND INSTALL_PROJECT)
+  Set(CTEST_CONFIGURE_COMMAND " \"${CMAKE_EXECUTABLE_NAME}\" \"-G${CTEST_CMAKE_GENERATOR}\" \"-DCBM_TEST_MODEL=${CBM_TEST_MODEL}\" \"-DCMAKE_BUILD_TYPE=${_BuildType}\" \"-DCTEST_USE_LAUNCHERS=${CTEST_USE_LAUNCHERS}\" \"${EXTRA_FLAGS}\" \"-DCMAKE_INSTALL_PREFIX=${CTEST_SOURCE_DIRECTORY}/install\" \"${CTEST_SOURCE_DIRECTORY}\" ")
+ElseIf(EXTRA_FLAGS)
+  Set(CTEST_CONFIGURE_COMMAND " \"${CMAKE_EXECUTABLE_NAME}\" \"-G${CTEST_CMAKE_GENERATOR}\" \"-DCBM_TEST_MODEL=${CBM_TEST_MODEL}\" \"-DCMAKE_BUILD_TYPE=${_BuildType}\" \"-DCTEST_USE_LAUNCHERS=${CTEST_USE_LAUNCHERS}\" \"${EXTRA_FLAGS}\" \"${CTEST_SOURCE_DIRECTORY}\" ")
 Else()
-  Set(CTEST_CONFIGURE_COMMAND " \"${CMAKE_EXECUTABLE_NAME}\" \"-G${CTEST_CMAKE_GENERATOR}\" \"-DCMAKE_BUILD_TYPE=${_Model}\" \"-DCTEST_USE_LAUNCHERS=${CTEST_USE_LAUNCHERS}\" \"${CTEST_SOURCE_DIRECTORY}\" ")
+  Set(CTEST_CONFIGURE_COMMAND " \"${CMAKE_EXECUTABLE_NAME}\" \"-G${CTEST_CMAKE_GENERATOR}\" \"-DCBM_TEST_MODEL=${CBM_TEST_MODEL}\" \"-DCMAKE_BUILD_TYPE=${_BuildType}\" \"-DCTEST_USE_LAUNCHERS=${CTEST_USE_LAUNCHERS}\" \"${CTEST_SOURCE_DIRECTORY}\" ")
 EndIf()
 
-If($ENV{ctest_model} MATCHES Nightly OR $ENV{ctest_model} MATCHES Weekly OR $ENV{ctest_model} MATCHES Profile)
+#If(${CBM_TEST_MODEL} MATCHES Nightly OR ${CBM_TEST_MODEL} MATCHES Weekly OR ${CBM_TEST_MODEL} MATCHES Profile)
+If(NOT ${_BuildType} MATCHES EXPERIMENTAL)
 
   Find_Program(GCOV_COMMAND gcov)
   If(GCOV_COMMAND)
@@ -49,139 +66,157 @@ If($ENV{ctest_model} MATCHES Nightly OR $ENV{ctest_model} MATCHES Weekly OR $ENV
     Set(CTEST_COVERAGE_COMMAND ${GCOV_COMMAND})
   EndIf(GCOV_COMMAND)
 
-  If(NOT $ENV{ctest_model} MATCHES Weekly)
-    Set(ENV{ctest_model} Nightly)
-  EndIf()
-
-  # get the information about conflicting or localy modified files
-  # from svn, extract the relavant information about the file name
-  # and put the result in the output variable
-  If(EXISTS ${CTEST_SOURCE_DIRECTORY}/.svn)
-    Execute_Process(COMMAND svn stat -u
-                    COMMAND grep ^[CM]
-                    COMMAND cut -c21-
-                    OUTPUT_VARIABLE FILELIST
-                    )
-
-    # create out of the output a cmake list. This step is done to convert the
-    # stream into seperated filenames.
-    # The trick is to exchange an "\n" by an ";" which is the separartor in
-    # a list created by cmake
-    String(REGEX REPLACE "\n" ";" _result "${FILELIST}")
-
-    ForEach(_file ${_result})
-      String(STRIP "${_file}" _file1)
-      Set(CTEST_NOTES_FILES ${CTEST_NOTES_FILES} "${CTEST_SOURCE_DIRECTORY}/${_file1}")
-    EndForEach(_file ${_result})
-  EndIf()
-
   CTEST_EMPTY_BINARY_DIRECTORY(${CTEST_BINARY_DIRECTORY})
 
 EndIf()
 
-If($ENV{ctest_model} MATCHES MergeRequest)
-  set(ENV{ctest_model} Continuous)
-EndIf()
-
-Ctest_Start($ENV{ctest_model})
+Ctest_Start(${_CMakeModel})
 
-If($ENV{ctest_model} MATCHES Continuous)
-  set(ENV{ctest_model} Nightly)
+unset(repeat)
+if(${_CMakeModel} MATCHES Continuous)
+  if(CMAKE_VERSION VERSION_GREATER_EQUAL 3.17)
+    set(repeat REPEAT UNTIL_PASS:2)
+  endif()
 EndIf()
 
+# The stop time should be a date compatible string without day nor timezone
+# Examples:
+# => CTEST_END_TIME_LIMIT=`date -d "${END_TIME}CET -5minutes" +"%H:%M:%S"`
+# => CTEST_END_TIME_LIMIT=`date -d "now +25minutes" +"%H:%M:%S"`
+unset(stop_time)
+If(DEFINED ENV{CTEST_END_TIME_LIMIT})
+  set(stop_time STOP_TIME "$ENV{CTEST_END_TIME_LIMIT}")
+  message(STATUS " End time for the ctest test runs set to ${stop_time}")
+EndIf()
 
-If(NOT $ENV{ctest_model} MATCHES Experimental)
+If(NOT ${_BuildType} MATCHES EXPERIMENTAL)
   Ctest_Update(SOURCE "${CTEST_SOURCE_DIRECTORY}")
 EndIf()
 
 Ctest_Configure(BUILD "${CTEST_BINARY_DIRECTORY}"
                 RETURN_VALUE _RETVAL
 )
+
 If(NOT _RETVAL)
-  Ctest_Build(BUILD "${CTEST_BINARY_DIRECTORY}")
-  If($ENV{ctest_model} MATCHES Continuous)
-    If(${CMAKE_VERSION} VERSION_LESS 3.14.0)
-      CTest_Submit(PARTS Update Configure Build)
+  Ctest_Build(BUILD "${CTEST_BINARY_DIRECTORY}"
+              NUMBER_ERRORS _NUM_ERROR
+             )
+
+  If(${_CMakeModel} MATCHES Continuous)
+    CTest_Submit(PARTS Update Configure Build
+                 BUILD_ID cdash_build_id
+                )
+    if(${_NUM_ERROR} GREATER 0)
+      message(STATUS " ")
+      message(STATUS " You can find the produced results on the CDash server")
+      message(STATUS " ")
+      message(STATUS " CDash Build Summary ..: "
+              "${CTEST_DROP_METHOD}://${CTEST_DROP_SITE}/buildSummary.php?buildid=${cdash_build_id}"
+             )
+      message(STATUS " CDash Test List ......: "
+              "${CTEST_DROP_METHOD}://${CTEST_DROP_SITE}/viewTest.php?buildid=${cdash_build_id}"
+             )
+      message(STATUS " ")
+      Message(STATUS "Build finished with ${_NUM_ERROR} errors")
+      message(FATAL_ERROR "Compilation failure")
+    endif()
+  EndIf()
+
+  If(DEFINED ENV{CI_TEST_STAGE_TOTAL_TIME_LIMIT})
+    # Compute test stage timeout based on current time + limit from environment variable
+    If(DEFINED ENV{CTEST_END_TIME_LIMIT})
+      # If also full DASH run timeout defined, also compare the two and keep the earliest one
+      execute_process (
+        COMMAND scripts/find_citests_ctest_stop_time.sh $ENV{CTEST_END_TIME_LIMIT}
+        OUTPUT_VARIABLE CI_TESTS_TOTAL_END_TIME_DATE
+      )
     Else()
-      CTest_Submit(PARTS Update Configure Build
-                   BUILD_ID cdash_build_id
-                  )
+      # Else just get the CI jpb timeout
+      execute_process (
+        COMMAND scripts/find_citests_ctest_stop_time.sh
+        OUTPUT_VARIABLE CI_TESTS_TOTAL_END_TIME_DATE
+      )
     EndIf()
+    set(stop_time STOP_TIME "${CI_TESTS_TOTAL_END_TIME_DATE}")
+    message(STATUS "Due to CI mode, Set end time for the ctest test runs to ${stop_time}")
   EndIf()
 
   Ctest_Test(BUILD "${CTEST_BINARY_DIRECTORY}"
-             PARALLEL_LEVEL $ENV{number_of_processors}
+             PARALLEL_LEVEL $ENV{number_of_processors_for_test}
+             ${repeat}
+             ${stop_time}
              RETURN_VALUE _ctest_test_ret_val
             )
 
-  If($ENV{ctest_model} MATCHES Continuous)
-    If(${CMAKE_VERSION} VERSION_LESS 3.14.0)
-      CTest_Submit(PARTS Test)
-    Else()
-      CTest_Submit(PARTS Test
-                   BUILD_ID cdash_build_id
-                  )
-    EndIf()
+  If(${_CMakeModel} MATCHES Continuous)
+    CTest_Submit(PARTS Test
+                 BUILD_ID cdash_build_id
+                )
   EndIf()
 
   If(GCOV_COMMAND)
     Ctest_Coverage(BUILD "${CTEST_BINARY_DIRECTORY}")
-    If($ENV{ctest_model} MATCHES Continuous)
-      If(${CMAKE_VERSION} VERSION_LESS 3.14.0)
-        CTest_Submit(PARTS Coverage)
-      Else()
-        CTest_Submit(PARTS Coverage
-                     BUILD_ID cdash_build_id
-                    )
-      EndIf()
+    If(${_CMakeModel} MATCHES Continuous)
+      CTest_Submit(PARTS Coverage
+                   BUILD_ID cdash_build_id
+                  )
     EndIf()
   EndIf()
 
   Ctest_Upload(FILES ${CTEST_NOTES_FILES})
-  If(NOT $ENV{ctest_model} MATCHES Continuous)
-    If(${CMAKE_VERSION} VERSION_LESS 3.14.0)
-      Ctest_Submit()
-    Else()
-      Ctest_Submit(BUILD_ID cdash_build_id)
-    EndIf()
+  If(NOT ${_CMakeModel} MATCHES Continuous)
+    Ctest_Submit(BUILD_ID cdash_build_id)
+  EndIf()
+
+  If(EXTRA_FLAGS MATCHES "CBM_TEST_INSTALL" AND NOT _ctest_test_ret_val)
+#  If(EXTRA_FLAGS MATCHES "INSTALL_PREFIX" AND EXTRA_FLAGS MATCHES "CBM_TEST_INSTALL" AND NOT _ctest_test_ret_val)
+    Message("Testing Installation")
+    execute_process(COMMAND ${BUILD_COMMAND} install -j$ENV{number_of_processors} WORKING_DIRECTORY ${CTEST_BINARY_DIRECTORY}
+                    RESULTS_VARIABLE _install_ret_value
+                   )
+    if (NOT _install_ret_value)
+      execute_process(COMMAND ${CMAKE_EXECUTABLE_NAME} -E rm -R build MQ algo analysis core external fles mvd reco sim
+                      WORKING_DIRECTORY ${CTEST_SOURCE_DIRECTORY}
+                     )
+      message("executing test suite in ${CTEST_BINARY_DIRECTORY}/install")
+      execute_process(COMMAND ${CTEST_SOURCE_DIRECTORY}/cmake/scripts/execute_installation_test.sh ${CTEST_SOURCE_DIRECTORY}/install
+                      RESULTS_VARIABLE _install_ret_value
+                     )
+    endif()
+  Else()
+     # if installation isn't tested the return value should be 0
+     set(_install_ret_value false)
   EndIf()
 
+  Message("_ctest_test_ret_val: ${_ctest_test_ret_val}")
+  Message("_install_ret_value: ${_install_ret_value}")
+
   # Pipeline should fail also in case of failed tests
-  if (_ctest_test_ret_val)
-    If(${CMAKE_VERSION} VERSION_LESS 3.14.0)
-    Else()
-      message(STATUS " ")
-      message(STATUS " You can find the produced results on the CDash server")
-      message(STATUS " ")
-      message(STATUS " CDash Build Summary ..: "
-              "${CTEST_DROP_METHOD}://${CTEST_DROP_SITE}/buildSummary.php?buildid=${cdash_build_id}"
-             )
-      message(STATUS " CDash Test List ......: "
-              "${CTEST_DROP_METHOD}://${CTEST_DROP_SITE}/viewTest.php?buildid=${cdash_build_id}"
-             )
-      message(STATUS " ")
-    EndIf()
+  if (_ctest_test_ret_val OR _install_ret_value)
+    message(STATUS " ")
+    message(STATUS " You can find the produced results on the CDash server")
+    message(STATUS " ")
+    message(STATUS " CDash Build Summary ..: "
+            "${CTEST_DROP_METHOD}://${CTEST_DROP_SITE}/buildSummary.php?buildid=${cdash_build_id}"
+           )
+    message(STATUS " CDash Test List ......: "
+            "${CTEST_DROP_METHOD}://${CTEST_DROP_SITE}/viewTest.php?buildid=${cdash_build_id}"
+           )
+    message(STATUS " ")
     Message(FATAL_ERROR "Some tests failed.")
   endif()
 
 Else()
-  If(${CMAKE_VERSION} VERSION_LESS "3.14.0")
-    Ctest_Submit()
-  Else()
-    CTest_Submit(BUILD_ID cdash_build_id)
-  EndIf()
+  CTest_Submit(BUILD_ID cdash_build_id)
 EndIf()
 
-If(${CMAKE_VERSION} VERSION_LESS 3.14.0)
-Else()
-  message(STATUS " ")
-  message(STATUS " You can find the produced results on the CDash server")
-  message(STATUS " ")
-  message(STATUS " CDash Build Summary ..: "
-          "${CTEST_DROP_METHOD}://${CTEST_DROP_SITE}/buildSummary.php?buildid=${cdash_build_id}"
-         )
-  message(STATUS " CDash Test List ......: "
-          "${CTEST_DROP_METHOD}://${CTEST_DROP_SITE}/viewTest.php?buildid=${cdash_build_id}"
-         )
-  message(STATUS " ")
-EndIf()
+message(STATUS " ")
+message(STATUS " You can find the produced results on the CDash server")
+message(STATUS " ")
+message(STATUS " CDash Build Summary ..: "
+        "${CTEST_DROP_METHOD}://${CTEST_DROP_SITE}/buildSummary.php?buildid=${cdash_build_id}"
+       )
+message(STATUS " CDash Test List ......: "
+        "${CTEST_DROP_METHOD}://${CTEST_DROP_SITE}/viewTest.php?buildid=${cdash_build_id}"
+       )
+message(STATUS " ")

Dart.sh

 #!/bin/bash
+# Copyright (C) 2007 GSI Helmholtzzentrum fuer Schwerionenforschung, Darmstadt
+# SPDX-License-Identifier: GPL-3.0-only
+# First commited by Florian Uhlig
+
 
 function print_example(){
 echo "##################################################################"
@@ -61,7 +65,8 @@ else
 fi
 
 # set the ctest model to command line parameter
-export ctest_model=$1
+#export ctest_model=$1
+ctest_model=$1
 
 # test for architecture
 arch=$(uname -s | tr '[A-Z]' '[a-z]')
@@ -114,14 +119,22 @@ then
   fi
 fi
 
+if [ -z $NCPU4TEST ]; then
+  export number_of_processors_for_test=$number_of_processors
+else
+  export number_of_processors_for_test=$NCPU4TEST
+fi
+
 echo "************************"
 date
 echo "LABEL: " $LABEL
 echo "SITE: " $SITE
 echo "Model: " ${ctest_model}
-echo "Nr. of processes: " $number_of_processors
+echo "Nr. of processes for build: " $number_of_processors
+echo "Nr. of processes for test: " $number_of_processors_for_test
 echo "************************"
 
 cd $SOURCEDIR
 
-ctest -S $SOURCEDIR/CbmRoot_test.cmake -V --VV 
+ctest -S $SOURCEDIR/CbmRoot_test.cmake -V -DCBM_TEST_MODEL=${ctest_model}
+#ctest -S $SOURCEDIR/CbmRoot_test.cmake -V --VV

MQ/CMakeLists.txt

-If(FairSoft_VERSION VERSION_LESS 18.6.0)
-  Add_Definitions(-DHAVE_FAIRMQSTATEMACHINE)
-EndIf()
+Set(FAIRMQ_LIBS FairMQStateMachine FairMQ)
+
+# RPATH information should be present for executables in the build as well
+# as in the installation directory
+
+# use, i.e. don't skip the full RPATH for the build tree
+set(CMAKE_SKIP_BUILD_RPATH FALSE)
+
+# when building, don't use the install RPATH already
+# (but later on when installing)
+set(CMAKE_BUILD_WITH_INSTALL_RPATH FALSE)
+
+set(CMAKE_INSTALL_RPATH "${CMAKE_INSTALL_PREFIX}/lib")
+
+# add the automatically determined parts of the RPATH
+# which point to directories outside the build tree to the install RPATH
+set(CMAKE_INSTALL_RPATH_USE_LINK_PATH TRUE)
 
 
-if(FairMQ_HAS_StateMachine)
-  Set(FAIRMQ_LIBS FairMQStateMachine FairMQ)
-else()
-  Set(FAIRMQ_LIBS FairMQ)
-EndIf()
 
 add_subdirectory(base)
 add_subdirectory(source)
@@ -22,9 +31,5 @@ add_subdirectory(mcbm)
 #add_subdirectory(sts)
 #add_subdirectory(test)
 
-# The following subdirectories contain files which do not compile with
-# FairRoot v18
-# Don't compile it for the time being
-# TODO: Fix the compilation problems
-  add_subdirectory(parmq)
-  add_subdirectory(hitbuilder)
+add_subdirectory(parmq)
+add_subdirectory(hitbuilder)

MQ/base/CMakeLists.txt

 set(INCLUDE_DIRECTORIES
-    ${CMAKE_CURRENT_SOURCE_DIR}
-    ${CMAKE_SOURCE_DIR}/MQ/base
-)
-
-Set(SYSTEM_INCLUDE_DIRECTORIES
-    ${SYSTEM_INCLUDE_DIRECTORIES}
-    ${FAIRMQ_INCLUDE_DIR}
-)
-
-include_directories(${INCLUDE_DIRECTORIES})
-include_directories(SYSTEM ${SYSTEM_INCLUDE_DIRECTORIES})
-
-set(LINK_DIRECTORIES
-  ${FAIRMQ_LIBRARY_DIR}
-)
-
-link_directories(${LINK_DIRECTORIES})
-
-set(FAIR_LIBS
-  FairMQ
-)
-
-If(FAIRLOGGER_FOUND)
-  set(FAIR_LIBS
-      ${FAIR_LIBS}
-      FairLogger
-     )
-EndIf()
+  ${CMAKE_CURRENT_SOURCE_DIR}
+  )
 
 set(SRCS
   CbmMQChannels.cxx
-)
+  )
+
+set(LIBRARY_NAME CbmMQBase)
+set(PUBLIC_DEPENDENCIES
+  FairMQ::FairMQ
+  )
 
-Set(LIBRARY_NAME CbmMQBase)
-Set(DEPENDENCIES
-    ${FAIR_LIBS}
-)
+set(INTERFACE_DEPENDENCIES
+  ROOT::Net
+  )
 
-GENERATE_LIBRARY()
+generate_cbm_library()

MQ/base/CbmMQChannels.cxx

+/* Copyright (C) 2019 GSI Helmholtzzentrum fuer Schwerionenforschung, Darmstadt
+   SPDX-License-Identifier: GPL-3.0-only
+   Authors: Florian Uhlig [committer] */
+
 #include "CbmMQChannels.h"
+
 #include "FairMQDevice.h"
 
-CbmMQChannels::CbmMQChannels(std::vector<std::string> allowedChannels)
-  : fAllowedChannels {allowedChannels} {
+CbmMQChannels::CbmMQChannels(std::vector<std::string> allowedChannels) : fAllowedChannels {allowedChannels}
+{
   fChannelsToSend.resize(fAllowedChannels.size());
   for (auto& entry : fChannelsToSend) {
     entry.push_back("");
@@ -10,32 +15,29 @@ CbmMQChannels::CbmMQChannels(std::vector<std::string> allowedChannels)
   fComponentsToSend.resize(fAllowedChannels.size());
 }
 
-bool CbmMQChannels::IsChannelNameAllowed(std::string channelName) {
+bool CbmMQChannels::IsChannelNameAllowed(std::string channelName)
+{
   for (auto const& entry : fAllowedChannels) {
     std::size_t pos1 = channelName.find(entry);
     if (pos1 != std::string::npos) {
       const std::vector<std::string>::const_iterator pos =
         std::find(fAllowedChannels.begin(), fAllowedChannels.end(), entry);
-      const std::vector<std::string>::size_type idx =
-        pos - fAllowedChannels.begin();
+      const std::vector<std::string>::size_type idx = pos - fAllowedChannels.begin();
       LOG(info) << "Found " << entry << " in " << channelName;
-      LOG(info) << "Channel name " << channelName
-                << " found in list of allowed channel names at position "
-                << idx;
+      LOG(info) << "Channel name " << channelName << " found in list of allowed channel names at position " << idx;
       fComponentsToSend[idx]++;
       // The array is initialized with one empty string. If the string has still teh value from initialization
       // exchnge the value by the new channel name. In any other case add one more entry to the vector
-      if (fChannelsToSend[idx].size() == 1
-          && fChannelsToSend[idx].at(0).empty()) {
+      if (fChannelsToSend[idx].size() == 1 && fChannelsToSend[idx].at(0).empty()) {
         fChannelsToSend[idx].at(0) = channelName;
-      } else {
+      }
+      else {
         fChannelsToSend[idx].push_back(channelName);
       }
       return true;
     }
   }
-  LOG(info) << "Channel name " << channelName
-            << " not found in list of allowed channel names.";
+  LOG(info) << "Channel name " << channelName << " not found in list of allowed channel names.";
   LOG(info) << "The allowed channels are: ";
   for (auto const& entry : fAllowedChannels) {
     LOG(info) << entry;
@@ -44,7 +46,8 @@ bool CbmMQChannels::IsChannelNameAllowed(std::string channelName) {
   return false;
 }
 
-bool CbmMQChannels::CheckChannels(FairMQDevice* device) {
+bool CbmMQChannels::CheckChannels(FairMQDevice* device)
+{
   // Get the information about created channels from the device
   // Check if the defined channels from the topology (by name)
   // are in the list of channels which are possible/allowed