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Commit ccf9a266 authored by Administrator's avatar Administrator Committed by David Emschermann
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Update autoinstaller script 

Move code into functions to get a clean main routine.
Add checking of prerequisites before compilation.
Add support for FairSoft versions after jun19 since these FairSoft
versions require a different build scheme.

Add CBM specific install instructions for OpenSuse and Fedora for
for packages which are not covered by the FairSoft documentation.
This is sqlite3 which is only needed by CBM and tbb and gsl which
showed problems on newer systems recently.
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autoinstall_framework.sh
+ 339
− 162
View file @ ccf9a266
......@@ -24,32 +24,57 @@
# 13.03.2015 - initial version
# by David Emschermann
exec &> >(tee -a .autoinstall_framework.log) # So the user can check up a complete log if he wishes.
main()
{
exec &> >(tee -a .autoinstall_framework.log) # So the user can check up a complete log if he wishes.
setup_env_variables
# choose your root version
export ROOTVER=6
parse_command_line "$@"
# put your desired variants here:
export FSOFTDEV=jun19p3
export FROOTDEV=v18.4.0
echo FSOFTVER: $FSOFTVER
echo FROOTVER: $FROOTVER
export FSOFTPRO=jun19p3
export FROOTPRO=v18.2.1
check_prerequisites
export FSOFTOLD=jun19p3
export FROOTOLD=v18.2.0
install_fairsoft
# set default version to pro
export FSOFTVER=$FSOFTPRO
export FROOTVER=$FROOTPRO
install_fairroot
install_cbmroot
}
SETUP_FAIRSOFT=0 && SETUP_FAIRROOT=0 && SETUP_CBMROOT=0;
[ $# -eq "0" ] && SETUP_FAIRSOFT=1 && SETUP_FAIRROOT=1 && SETUP_CBMROOT=1 : echo "Some Error has occurred" # Default behaviour with no flags, all three should be installed.
setup_env_variables()
{
# choose your root version
export ROOTVER=6
while test $# -gt 0; do
case "$1" in
# put your desired variants here:
export FSOFTDEV=apr21p2
export FROOTDEV=v18.6.7
export FSOFTPRO=jun19p3
export FROOTPRO=v18.2.1
export FSOFTOLD=jun19p3
export FROOTOLD=v18.2.0
# set default version to pro
export FSOFTVER=$FSOFTPRO
export FROOTVER=$FROOTPRO
# My experience tells me that the default could be 2, even if there is only 1 processor, as 1 processing and 1 queued job normally is optimal Will leave it at 1 though.
export NUMOFCPU=`[ -f /proc/cpuinfo ] && grep -i processor /proc/cpuinfo | wc -l || echo 1`
export CBMSRCDIR=`pwd`
}
parse_command_line()
{
SETUP_FAIRSOFT=0 && SETUP_FAIRROOT=0 && SETUP_CBMROOT=0;
[ $# -eq "0" ] && SETUP_FAIRSOFT=1 && SETUP_FAIRROOT=1 && SETUP_CBMROOT=1 : echo "Some Error has occurred" # Default behaviour with no flags, all three should be installed.
while test $# -gt 0; do
case "$1" in
-s|-fs|-fairsoft|--fairsoft)
echo "*** FairSoft to be installed"
SETUP_FAIRSOFT="1";
......@@ -98,28 +123,23 @@ while test $# -gt 0; do
# ./autobuild_framework dev 1 0 0
# would install FairSoft but not FairRoot nor CbmRoot.
if [ $1 -gt 0 ];
then
SETUP_FAIRSOFT="1";
echo "FairSoft flaged for install"
if [ $1 -gt 0 ]; then
SETUP_FAIRSOFT="1";
echo "FairSoft flaged for install"
fi
if [ ! -z $2 ]; # This combersome and longform if statement exist due to known issues regarding ampersands within bash cases.
then
if [ $2 -gt 0 ];
then
SETUP_FAIRROOT="1";
echo "FairRoot flaged for install"
fi
if [ ! -z $2 ]; then # This combersome and longform if statement exist due to known issues regarding ampersands within bash cases.
if [ $2 -gt 0 ]; then
SETUP_FAIRROOT="1";
echo "FairRoot flaged for install"
fi
fi
if [ ! -z $3 ]; # This combersome and longform if statement exist due to known issues regarding ampersands within bash cases.
then
if [ $3 -gt 0 ];
then
SETUP_CBMROOT="1";
echo "CbmRoot flaged for install"
fi
if [ ! -z $3 ]; then # This combersome and longform if statement exist due to known issues regarding ampersands within bash cases.
if [ $3 -gt 0 ]; then
SETUP_CBMROOT="1";
echo "CbmRoot flaged for install"
fi
fi
# To prevent the pausing a script with maybe autoinstall_framework called the old way.
......@@ -143,165 +163,322 @@ while test $# -gt 0; do
echo "Example case to install only FairRoot and CbmRoot (and not FairSoft)"
echo "./autoinstall_framework.sh -fr -cr"
exit 0;;
esac
done
esac
done
}
# My experience tells me that the default could be 2, even if there is only 1 processor, as 1 processing and 1 queued job normally is optimal Will leave it at 1 though.
export NUMOFCPU=`[ -f /proc/cpuinfo ] && grep -i processor /proc/cpuinfo | wc -l || echo 1`
export CBMSRCDIR=`pwd`
check_prerequisites()
{
#-----------------------------------------------------------------------------------------------------
nof_missing_packages=0
missing_packages=""
echo FSOFTVER: $FSOFTVER
echo FROOTVER: $FROOTVER
year=$(echo $FSOFTVER | cut -c4,5)
#-----------------------------------------------------------------------------------------------------
#
## FairSoft
#
# Array with binaries which are needed for the compilation
programs=(cmake curl gcc g++ gfortran make patch sed bzip2 unzip gzip tar svn git flex lsb_release wget automake autoconf libtoolize)
if [ $SETUP_FAIRSOFT -ge 1 ]; then
echo "Setting up FairSoft ..."
for executable in "${programs[@]}"; do
check_executable $executable
done
# check if sqlite3 is available
if [ -f /usr/include/sqlite3.h ] ; then
echo
echo "Sqlite3 is available"
echo
else
echo
echo "Sqlite3 is not available"
echo
echo "On Debian, please install as follows:"
echo "sudo apt install libsqlite3-dev"
echo
echo "On OpenSuSE, please install as follows:"
echo "zypper install libsqlite3-0 sqlite3-devel"
echo
echo "afterwards, restart autoinstall_framework.sh"
echo
sleep 5
exit
check_file_exist /usr/include/sqlite3.h sqlite3-dev
check_file_exist /usr/include/X11/Xlib.h x11-dev
check_file_exist /usr/include/X11/Xft/Xft.h xft-dev
check_file_exist /usr/include/X11/extensions/Xext.h xext-dev
check_file_exist /usr/include/X11/xpm.h xpm-dev
check_file_exist /usr/include/GL/glu.h mesa-dev
check_file_exist /usr/include/curses.h ncurses-dev
check_file_exist /usr/include/bzlib.h bz2-dev
check_file_exist /usr/include/openssl/ssl.h ssl-dev
check_file_exist /usr/include/gsl/gsl_types.h gsl-dev
check_file_exist /usr/include/tbb/tbb.h tbb-dev
check_file_exist /usr/bin/curl-config curl-dev
check_file_exist /usr/bin/xml2-config xml2-dev
if [ $year -lt 20 ]; then
check_file_exist /usr/bin/xmkmf xutils-dev
check_file_exist /usr/bin/krb5-config krb5-dev
fi
cd ..
git clone https://github.com/FairRootGroup/FairSoft fairsoft_src_${FSOFTVER}_root${ROOTVER}
cd fairsoft_src_${FSOFTVER}_root${ROOTVER}
git tag -l
git checkout -b $FSOFTVER $FSOFTVER
tmp=$(which python2-config)
if [ $? -ne 0 ]; then
tmp=$(which python3-config)
if [ $? -ne 0 ]; then
nof_missing_packages=$((nof_missing_packages+1))
missing_packages="python-dev, $missing_packages"
fi
fi
if [ $ROOTVER -eq 6 ]; then
sed s/build_root6=no/build_root6=yes/ automatic.conf > automatic1_root.conf
else
cp automatic.conf automatic1_root.conf
if [ $nof_missing_packages -ne 0 ]; then
echo ""
echo "The following packages are missing and need to be installed"
echo $missing_packages
echo ""
echo "For further information which packages need to be installed"
echo "check the documentation on the FairSoft GitHub page at"
if [ $year -lt 20 ]; then
echo ""
echo "https://github.com/FairRootGroup/FairSoft/tree/$FSOFTVER"
echo ""
echo "For Linux check dependencies.md"
echo "For macosx check dependencies_macosx.md"
else
echo "https://github.com/FairRootGroup/FairSoft/blob/$FSOFTVER/legacy/dependencies.md"
fi
echo ""
echo "and follow the given instructions."
echo
# check if sqlite3 is available
missing=0
if [[ "$missing_packages" =~ .*"sqlite3".* ]]; then
missing=$((missing+1))
fi
if [[ "$missing_packages" =~ .*"gsl".* ]]; then
missing=$((missing+1))
fi
if [[ "$missing_packages" =~ .*"tbb".* ]]; then
missing=$((missing+1))
fi
if [[ $missing -ne 0 ]];then
if [[ "$missing_packages" =~ .*"sqlite3".* ]]; then
echo
echo "Sqlite3 is not available which may not be part of the above installation instructions"
echo
echo "On Debian or Ubuntu, please install as follows:"
echo "sudo apt install libsqlite3-dev"
echo
echo "On OpenSuSE, please install as follows:"
echo "zypper install libsqlite3-0 sqlite3-devel"
echo
echo "On Fedora, please install as follows:"
echo "dnf install sqlite-devel"
echo
echo "afterwards, restart autoinstall_framework.sh"
echo
fi
if [[ "$missing_packages" =~ .*"tbb".* ]]; then
echo
echo "The tbb development package is not available which may not be part of the above installation instructions"
echo
echo "On Debian or Ubuntu, please install as follows:"
echo "sudo apt install libtbb-dev"
echo
echo "On OpenSuSE, please install as follows:"
echo "zypper install tbb-devel"
echo
echo "On Fedora, please install as follows:"
echo "dnf install tbb-devel"
echo
echo "afterwards, restart autoinstall_framework.sh"
echo
fi
if [[ "$missing_packages" =~ .*"gsl".* ]]; then
echo
echo "The gsl development package is not available which may not be part of the above installation instructions"
echo
echo "On Debian or Ubuntu, please install as follows:"
echo "sudo apt install libgsl-dev"
echo
echo "On OpenSuSE, please install as follows:"
echo "zypper install gsl-devel"
echo
echo "On Fedora, please install as follows:"
echo "dnf install gsl-devel"
echo
echo "afterwards, restart autoinstall_framework.sh"
echo
fi
fi
exit
fi
echo
echo "All needed external software is installed"
echo
}
check_executable()
{
# check if executable is available
# pass result into a temporary variable to have a quite mode
tmp=$(which $1)
if [ $? -ne 0 ]; then
nof_missing_packages=$((nof_missing_packages+1))
missing_packages="$1, $missing_packages"
fi
}
FSOFTINSTALLPATH=`pwd | sed s/fairsoft_src_/fairsoft_/`
sed /SIMPATH_INSTALL/d automatic1_root.conf > automatic2_path.conf
echo " SIMPATH_INSTALL=$FSOFTINSTALLPATH/installation" >> automatic2_path.conf
check_file_exist()
{
file=$1
package=$2
sed s/compiler=/compiler=gcc/ automatic2_path.conf > automatic3_gcc.conf
if [ ! -f $file ] ; then
nof_missing_packages=$((nof_missing_packages+1))
missing_packages="$package, $missing_packages"
fi
}
./configure.sh automatic3_gcc.conf
cd $CBMSRCDIR
echo "done installing FairSoft"
fi
install_fairsoft()
{
if [ $SETUP_FAIRSOFT -ge 1 ]; then
echo "Setting up FairSoft ..."
#-----------------------------------------------------------------------------------------------------
#
## FairRoot
#
cd ..
git clone https://github.com/FairRootGroup/FairSoft fairsoft_src_${FSOFTVER}_root${ROOTVER}
cd fairsoft_src_${FSOFTVER}_root${ROOTVER}
git tag -l
git checkout -b tag_$FSOFTVER $FSOFTVER
if [ $SETUP_FAIRROOT -ge 1 ]; then
echo "Setting up FairRoot ..."
year=$(echo $FSOFTVER | cut -c4,5)
if [ $year -lt 20 ]; then
install_fairsoft_before_2020
else
install_fairsoft_since_2020
fi
# set SIMPATH
cd ..
echo "SIMPATH before: $SIMPATH"
cd fairsoft_${FSOFTVER}_root${ROOTVER}/installation/
export SIMPATH=`pwd`
echo "SIMPATH now : $SIMPATH"
cd $CBMSRCDIR
cd $CBMSRCDIR
echo "done installing FairSoft"
fi
}
echo PATH=$SIMPATH/bin:$PATH
export PATH=$SIMPATH/bin:$PATH
cd ..
git clone https://github.com/FairRootGroup/FairRoot.git fairroot_src_$FROOTVER-fairsoft_${FSOFTVER}_root${ROOTVER}
cd fairroot_src_$FROOTVER-fairsoft_${FSOFTVER}_root${ROOTVER}
git tag -l
git checkout -b $FROOTVER $FROOTVER
mkdir build
cd build
cmake \
-DCMAKE_CXX_COMPILER=$($SIMPATH/bin/fairsoft-config --cxx) \
-DCMAKE_C_COMPILER=$($SIMPATH/bin/fairsoft-config --cc) \
-DCMAKE_INSTALL_PREFIX=../../fairroot_$FROOTVER-fairsoft_${FSOFTVER}_root${ROOTVER} \
..
nice make install -j$NUMOFCPU
install_fairsoft_before_2020()
{
if [ $ROOTVER -eq 6 ]; then
sed s/build_root6=no/build_root6=yes/ automatic.conf > automatic1_root.conf
else
cp automatic.conf automatic1_root.conf
fi
cd $CBMSRCDIR
echo "done installing FairRoot"
fi
FSOFTINSTALLPATH=`pwd | sed s/fairsoft_src_/fairsoft_/`
sed /SIMPATH_INSTALL/d automatic1_root.conf > automatic2_path.conf
echo " SIMPATH_INSTALL=$FSOFTINSTALLPATH/installation" >> automatic2_path.conf
#-----------------------------------------------------------------------------------------------------
#
## CbmRoot
#
sed s/compiler=/compiler=gcc/ automatic2_path.conf > automatic3_gcc.conf
if [ ${SETUP_CBMROOT} -eq "1" ];
then
echo "Setting up CbmRoot ..."
./configure.sh automatic3_gcc.conf
result=$?
if [ $result -ne 0 ]; then
echo
echo "Something went wrong with the installation."
echo "Please check the output above."
exit
fi
# set SIMPATH
cd ..
echo "SIMPATH before: $SIMPATH"
cd fairsoft_${FSOFTVER}_root${ROOTVER}/installation/
export SIMPATH=`pwd`
echo "SIMPATH now : $SIMPATH"
cd $CBMSRCDIR
}
# set FAIRROOTPATH
cd ..
cd fairroot_$FROOTVER-fairsoft_${FSOFTVER}_root${ROOTVER}
export FAIRROOTPATH=`pwd`
echo "FAIRROOTPATH: $FAIRROOTPATH"
cd $CBMSRCDIR
echo PATH=$SIMPATH/bin:$PATH
export PATH=$SIMPATH/bin:$PATH
install_fairsoft_since_2020()
{
FSOFTINSTALLPATH=`pwd | sed s/fairsoft_src_/fairsoft_/`
cd ..
cmake -S $PWD -B $PWD/build -C $PWD/FairSoftConfig.cmake -DCMAKE_INSTALL_PREFIX=$FSOFTINSTALLPATH/installation
if [ $? -ne 0 ]; then
echo "Something went wrong with the FairSoft configuration"
exit
fi
cd $CBMSRCDIR
mkdir build
cd build
cmake \
-DCMAKE_CXX_COMPILER=$($SIMPATH/bin/fairsoft-config --cxx) \
-DCMAKE_C_COMPILER=$($SIMPATH/bin/fairsoft-config --cc) \
..
nice make -j$NUMOFCPU
cd ..
echo "done installing CbmRoot"
[ -z $ANSWER ] && (
cat << EOT
cmake --build $PWD/build -j$NUMOFCPU
if [ $? -ne 0 ]; then
echo "Something went wrong with the FairSoft build"
exit
fi
}
install_fairroot()
{
if [ $SETUP_FAIRROOT -ge 1 ]; then
echo "Setting up FairRoot ..."
cd ..
echo "SIMPATH before: $SIMPATH"
cd fairsoft_${FSOFTVER}_root${ROOTVER}/installation/
export SIMPATH=`pwd`
echo "SIMPATH now : $SIMPATH"
cd $CBMSRCDIR
echo PATH=$SIMPATH/bin:$PATH
export PATH=$SIMPATH/bin:$PATH
cd ..
git clone https://github.com/FairRootGroup/FairRoot.git fairroot_src_$FROOTVER-fairsoft_${FSOFTVER}_root${ROOTVER}
cd fairroot_src_$FROOTVER-fairsoft_${FSOFTVER}_root${ROOTVER}
git tag -l
git checkout -b tag_$FROOTVER $FROOTVER
mkdir -p build
cd build
cmake \
-DCMAKE_CXX_COMPILER=$($SIMPATH/bin/fairsoft-config --cxx) \
-DCMAKE_C_COMPILER=$($SIMPATH/bin/fairsoft-config --cc) \
-DCMAKE_INSTALL_PREFIX=../../fairroot_$FROOTVER-fairsoft_${FSOFTVER}_root${ROOTVER} \
..
nice make install -j$NUMOFCPU
cd $CBMSRCDIR
echo "done installing FairRoot"
fi
}
install_cbmroot()
{
if [ ${SETUP_CBMROOT} -eq "1" ]; then
echo "Setting up CbmRoot ..."
cd ..
echo "SIMPATH before: $SIMPATH"
cd fairsoft_${FSOFTVER}_root${ROOTVER}/installation/
export SIMPATH=`pwd`
echo "SIMPATH now : $SIMPATH"
cd $CBMSRCDIR
cd ..
cd fairroot_$FROOTVER-fairsoft_${FSOFTVER}_root${ROOTVER}
export FAIRROOTPATH=`pwd`
echo "FAIRROOTPATH: $FAIRROOTPATH"
cd $CBMSRCDIR
echo PATH=$SIMPATH/bin:$PATH
export PATH=$SIMPATH/bin:$PATH
cd ..
cd $CBMSRCDIR
mkdir -p build
cd build
cmake \
-DCMAKE_CXX_COMPILER=$($SIMPATH/bin/fairsoft-config --cxx) \
-DCMAKE_C_COMPILER=$($SIMPATH/bin/fairsoft-config --cc) \
..
nice make -j$NUMOFCPU
if [ $? -ne 0 ]; then
echo "Something went wrong with the CbmRoot installation"
exit
fi
cd ..
echo "done installing CbmRoot"
[ -z $ANSWER ] && (
cat << EOT
Since the system is now installed. Shall I switch to the new environment?
source build/config.sh
Reply Yes or Y for confirmation ????
EOT
) && read ANSWER
if (echo "$ANSWER" | sed -n '/^\(Y\|y\)/!{q10}')
then
echo "A yes detected."
source build/config.sh;
echo "Environmental variables and paths updated"
fi
) && read ANSWER
fi
if (echo "$ANSWER" | sed -n '/^\(Y\|y\)/!{q10}'); then
echo "A yes detected."
source build/config.sh;
echo "Environmental variables and paths updated"
fi
fi
}
#####################################################################################
main "$@"
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