Fix CI tests in macro/run

All transport macros now properly depend on run_cleanup.

Remove duplicate entries for json config tests.

Revert some changes which were introduced with 01e5e5ae but overwritten
with 827c8050.

Run tests for all defined setups.
With commit e6c87d7a (MR !646) many new setups for APR21 and DEC21 were added.
Unfortunately the generated file names weren't changed accordingly. This
results in a situation that not all defined setups were executed.
As example in the case of three setups with the names
sis100_electron, sis100_electron_APR21 and sis100_electron_DEC21 only one
setup was tested. This was either the first or the last defined setup.
Now all defined setups are tested which increases the number of test in the
run directory from 63 to 111.