Prevents delete geometry from radlen test

Removes deleted geometries from the radlen checker. Uses git diff from upstream master rather than relative to HEAD. Makes regex for filename more explicit.

ci_scripts/check_radlen.sh

@@ -33,16 +33,16 @@ variables=`echo "$line" | sed -e 's/eff//g' | sed -e 's/index/jndex/g' | sed -e
     $variables \
     'BEGIN{\
         if(Z<1){
-        printf "SKIP \t "; \
+        printf "SKIP    "; \
         exit 3;
         };
         cal_rad_len=(716.4*A/(Z*(Z+1)*log(287/sqrt(Z)))/rho);\
         #print cal_rad_len;
         diff=(cal_rad_len - radlen);\
         if(diff*diff <= TOL*TOL*radlen*radlen ){\
-        printf "OKAY  " cal_rad_len; exit 1;
+        printf "OKAY    " cal_rad_len; exit 1;
         }else{\
-        printf "FAIL  " cal_rad_len; exit 2;
+        printf "FAIL    " cal_rad_len; exit 2;
         }}'
 
     STATUS=$?;