.ci/online/Dockerfile

+ARG TAG=12-fair202211.4-rocm5.4
+ARG REGISTRY=hub.cbm.gsi.de/computing/images/online
+
+FROM ${REGISTRY}/dev:${TAG} as build
+  ARG SOURCE_DIR=/opt/cbm/src
+  WORKDIR ${SOURCE_DIR}
+  # Kaniko doesn't support RUN --mount, so we have to copy the source code instead
+  COPY . .
+  RUN .ci/online/scripts/install.sh
+
+FROM ${REGISTRY}/runtime:${TAG}
+  ARG CBMROOT_PATH=/opt/cbm/cbmroot
+  ARG FAIRSOFT_PATH=/opt/cbm/fairsoft
+  COPY --from=build ${CBMROOT_PATH}/bin ${CBMROOT_PATH}/bin
+  COPY --from=build ${CBMROOT_PATH}/lib/*.so ${CBMROOT_PATH}/lib/
+  # FIXME HACK FOR DC OCT 23
+  COPY --from=build ${FAIRSOFT_PATH}/lib/libGenVector.so ${FAIRSOFT_PATH}/lib/.
+  COPY --from=build ${FAIRSOFT_PATH}/lib/libGenVector.so.6.26 ${FAIRSOFT_PATH}/lib/.
+  COPY --from=build ${FAIRSOFT_PATH}/lib/libGenVector.so.6.26.10 ${FAIRSOFT_PATH}/lib/.
+  COPY --from=build ${FAIRSOFT_PATH}/lib/libCore.so ${FAIRSOFT_PATH}/lib/.
+  COPY --from=build ${FAIRSOFT_PATH}/lib/libCore.so.6.26 ${FAIRSOFT_PATH}/lib/.
+  COPY --from=build ${FAIRSOFT_PATH}/lib/libCore.so.6.26.10 ${FAIRSOFT_PATH}/lib/.
+
+  ENV LD_LIBRARY_PATH=${CBMROOT_PATH}/lib:${FAIRSOFT_PATH}/lib:/opt/rocm/lib:${LD_LIBRARY_PATH}
+  ENV PATH=${CBMROOT_PATH}/bin:${PATH}
+  CMD ["cbmreco"]

.ci/online/DockerfileBuild

+FROM gcr.io/kaniko-project/executor:v1.16.0-debug
+    ARG USERNAME="username"
+    ARG PASSWORD="your_password"
+    ARG REGISTRY="hub.cbm.gsi.de"
+    ARG IMAGE="${REGISTRY}/computing/cbmroot/cbm_online"
+    ARG TAG="${USER}-debug"
+    RUN mkdir -p /kaniko/.docker
+    RUN echo "{\"auths\":{\"${REGISTRY}\":{\"username\":\"${USERNAME}\",\"password\":\"${PASSWORD}\"}}}" > /kaniko/.docker/config.json
+    # TODO: Mount CbmRoot source instead of copying it into the container (-> same with authentification...)
+    COPY . /workspace
+    ENV IMAGE=${IMAGE}
+    ENV TAG=${TAG}
+    ENTRYPOINT ["/bin/sh" , "-xc", "/kaniko/executor --context dir:///workspace --dockerfile /workspace/algo/containers/cbm_online/Dockerfile --destination $IMAGE:$TAG"]

.ci/online/make_build_image.sh

+#!/bin/bash
+
+set -e
+
+user="$1"
+password="$2"
+
+script=$(readlink -f "$0")
+
+function check_arg() {
+    if [ -z "$1" ]; then
+        echo "Error: No $2 specified."
+        echo "Usage: $script <user> <password>"
+        exit 1
+    fi
+}
+
+check_arg "$user" "user"
+check_arg "$password" "password"
+
+# Set tag as optional third argument
+if [ -z "$3" ]; then
+    tag="$user-debug"
+else
+    tag="$3"
+fi
+
+# This script must be run from the CbmRoot top level directory.
+# Check for .git, .clang-format, and .gitlab-ci.yml
+if [ ! -d .git ] || [ ! -f .clang-format ] || [ ! -f .gitlab-ci.yml ]; then
+    echo "Error: This script must be run from the CbmRoot top level directory."
+    exit 1
+fi
+
+registry="hub.cbm.gsi.de/computing/cbmroot"
+image="cbm_online"
+
+build_args=" \
+    --build-arg="USERNAME=$user" \
+    --build-arg="PASSWORD=$password" \
+    --build-arg="TAG=$tag" \
+"
+dockerfile="algo/containers/cbm_online/DockerfileBuild"
+docker build --progress plain $build_args -f $dockerfile -t cbm_online_builder .

.ci/online/scripts/install.sh

+#!/bin/bash
+
+set -e
+
+srcdir=cbmroot
+build_type=RelWithDebInfo
+install_prefix=/opt/cbm/cbmroot
+fairsoft_path=/opt/cbm/fairsoft
+enable_hip=ON
+rocm_root=/opt/rocm
+hip_archs="gfx906;gfx908" # MI50;MI100
+n_jobs=16
+
+cmake_args="-DCMAKE_INSTALL_PREFIX=$install_prefix \
+    -DCMAKE_BUILD_TYPE=$build_type \
+    -DSIMPATH=$fairsoft_path \
+    -DXPU_ENABLE_HIP=$enable_hip \
+    -DXPU_ROCM_ROOT=$rocm_root \
+    -DXPU_HIP_ARCH=$hip_archs \
+"
+
+ln -s ../cmake algo/cmake
+cmake -S algo -B build $cmake_args
+cmake --build build -j$n_jobs --target install

.ci/online/test_run.sh

+#! /bin/bash
+
+set -e
+
+IMAGE=hub.cbm.gsi.de/fweig/containers/cbm_online:online-container
+DOCKER_FLAGS=" \
+    --rm \
+    -it \
+    --mount type=bind,source=$HOME/cbm/params,target=/opt/cbm/params \
+    --mount type=bind,source=/home/cbmdata/mcbm22/2391,target=/opt/cbm/data \
+"
+
+CMD="cbmreco"
+CMD_FLAGS=" \
+    -p /opt/cbm/params \
+    -i /opt/cbm/data/2391_node8_1_0000.tsa \
+    -n 1 \
+    --omp 1 \
+"
+
+docker run $DOCKER_FLAGS $IMAGE $CMD $CMD_FLAGS
+# docker run $DOCKER_FLAGS $IMAGE ls -l /opt/cbm/data

.ci/online/test_run_gpu.sh

+#! /bin/bash
+
+set -e
+
+IMAGE=hub.cbm.gsi.de/fweig/containers/cbm_online:online-container
+DOCKER_FLAGS=" \
+    --rm \
+    -it \
+    --mount type=bind,source=$HOME/cbm/params,target=/opt/cbm/params \
+    --mount type=bind,source=/home/cbmdata/mcbm22/2391,target=/opt/cbm/data \
+    --device=/dev/kfd \
+    --device=/dev/dri \
+    --security-opt seccomp=unconfined \
+    --group-add video
+"
+
+CMD="cbmreco"
+CMD_FLAGS=" \
+    -p /opt/cbm/params \
+    -i /opt/cbm/data/2391_node8_1_0000.tsa \
+    -n 1 \
+    --omp 1\
+    -l info \
+    -d hip1 \
+"
+# CMD=xpuinfo
+# CMD_FLAGS=
+
+docker run $DOCKER_FLAGS $IMAGE $CMD $CMD_FLAGS
+# docker run $DOCKER_FLAGS $IMAGE ls -l /opt/cbm/data

.clang-format

 ---
-AccessModifierOffset: -2
+AccessModifierOffset: -1
+
 AlignAfterOpenBracket: Align
-#AlignConsecutiveMacros: true
 AlignConsecutiveAssignments: true
+AlignConsecutiveBitFields: true
 AlignConsecutiveDeclarations: false
+#AlignConsecutiveMacros: true
 AlignEscapedNewlines: Right
 AlignOperands: true
 AlignTrailingComments: true
-#AllowAllArgumentsOnNextLine: true
-#AllowAllConstructorInitializersOnNextLine: true
+
+AllowAllArgumentsOnNextLine: false
+AllowAllConstructorInitializersOnNextLine: false
 AllowAllParametersOfDeclarationOnNextLine: false
-AllowShortBlocksOnASingleLine: true
+
+AllowShortBlocksOnASingleLine: Never
 AllowShortCaseLabelsOnASingleLine: true
+AllowShortEnumsOnASingleLine: false
 AllowShortFunctionsOnASingleLine: All
-AllowShortIfStatementsOnASingleLine: true
-#AllowShortLambdasOnASingleLine: All
+AllowShortIfStatementsOnASingleLine: WithoutElse
+AllowShortLambdasOnASingleLine: All
 AllowShortLoopsOnASingleLine: false
-AlwaysBreakAfterDefinitionReturnType: None
+
+#AlwaysBreakAfterDefinitionReturnType: None
 AlwaysBreakAfterReturnType: None
 AlwaysBreakBeforeMultilineStrings: false
-AlwaysBreakTemplateDeclarations: true
-BinPackArguments: false
-BinPackParameters: false
+AlwaysBreakTemplateDeclarations: Yes
+
+BinPackArguments: true
+BinPackParameters: true
+
+# Discuss
 BreakBeforeBinaryOperators: NonAssignment
-BreakBeforeBraces: Attach
+
+BreakBeforeBraces: Custom
+BraceWrapping:
+  AfterCaseLabel:        false
+  AfterClass:            false
+  AfterControlStatement: Never
+  AfterEnum:             false
+  AfterFunction:         true
+  AfterNamespace:        true
+  AfterObjCDeclaration:  false
+  AfterStruct:           false
+  AfterUnion:            false
+  AfterExternBlock:      false
+  BeforeCatch:           true
+  BeforeElse:            true
+  BeforeLambdaBody:      false
+  BeforeWhile:           false
+  IndentBraces:          false
+  SplitEmptyFunction:    true
+  SplitEmptyRecord:      true
+  SplitEmptyNamespace:   true
+
 BreakBeforeTernaryOperators: true
 BreakConstructorInitializers: BeforeComma
 BreakInheritanceList: AfterColon
-ColumnLimit: 80
+
+#Discuss
+BreakStringLiterals: true
+
+ColumnLimit: 120
 CompactNamespaces: false
 ConstructorInitializerAllOnOneLineOrOnePerLine: true
 ConstructorInitializerIndentWidth: 2
 ContinuationIndentWidth: 2
 Cpp11BracedListStyle: true
+DeriveLineEnding: false
 DerivePointerAlignment: false
 DisableFormat: false
 ExperimentalAutoDetectBinPacking: false
 FixNamespaceComments: true
-IncludeBlocks: Preserve
+
+# Implement ordering of include statements
+IncludeBlocks: Regroup
+IncludeCategories:
+  - Regex:           '^("|<)Cbm'
+    Priority:        1
+  - Regex:           '^("|<).*/Cbm'
+    Priority:        1
+  - Regex:          '".*"'
+    Priority:        1
+  - Regex:           '^("|<).*slice'
+    Priority:        2
+  - Regex:           '^("|<)Monitor.hpp'
+    Priority:        2
+  - Regex:           '^("|<)System.hpp'
+    Priority:        2
+  - Regex:           '^("|<)Fair'
+    Priority:        3
+  - Regex:           '^("|<)Logger.h'
+    Priority:        3
+  - Regex:           '^("|<)T.*\.h'
+    Priority:        4
+  - Regex:           '^("|<)Rt.*\.h'
+    Priority:        4
+  - Regex:           '^("|<)boost'
+    Priority:        5
+  - Regex:           '^<.*[^\.]h>'
+    Priority:        6
+  - Regex:           '^<.*[^\.h]>'
+    Priority:        6
+  - Regex:           '^<.*>'
+    Priority:        7
+  - Regex:           '.*'
+    Priority:        8
+
+IndentCaseBlocks: false
 IndentCaseLabels: true
+IndentExternBlock: Indent
+IndentGotoLabels: false
 IndentPPDirectives: None
 IndentWidth: 2
 IndentWrappedFunctionNames: false
+
 KeepEmptyLinesAtTheStartOfBlocks: true
 Language: Cpp
 MaxEmptyLinesToKeep: 2
 NamespaceIndentation: All
 ObjCBinPackProtocolList: Auto
 ObjCBlockIndentWidth: 2
+
+#Discuss Penalties
 PenaltyBreakAssignment: 2
+
 PointerAlignment: Left
 ReflowComments: false
 SortIncludes: true
 SortUsingDeclarations: true
+
 SpaceAfterCStyleCast: true
 #SpaceAfterLogicalNot: true
 SpaceAfterTemplateKeyword: false
 SpaceBeforeAssignmentOperators: true
-SpaceBeforeCpp11BracedList: true
+SpaceBeforeCpp11BracedList: false
 SpaceBeforeCtorInitializerColon: true
 SpaceBeforeInheritanceColon: true
 SpaceBeforeParens: ControlStatements
 SpaceBeforeRangeBasedForLoopColon: true
+SpaceBeforeSquareBrackets: false
+SpaceInEmptyBlock: false
 SpaceInEmptyParentheses: false
 SpacesBeforeTrailingComments: 2
 SpacesInAngles: false
 SpacesInCStyleCastParentheses: false
+SpacesInConditionalStatement: false
+SpacesInContainerLiterals: false
 SpacesInParentheses: false
 SpacesInSquareBrackets: false
+
+WhitespaceSensitiveMacros: ['CBM_ENUM_DICT', 'CBM_YAML_PROPERTIES']
+StatementMacros: ['CBM_PARALLEL_FOR']
+
+Standard: c++11
+
 TabWidth: 8
+UseCRLF: false
 UseTab: Never
-
 ...

.clang-tidy

+Checks:          '-*,modernize-deprecated-headers'
+WarningsAsErrors: ''
+HeaderFilterRegex: '.*'
+AnalyzeTemporaryDtors: false
+FormatStyle:     file
+CheckOptions:
+  - key:             modernize-deprecated-headers.CheckHeaderFile
+    value:           'true'
+...

.dockerignore

+.git
+.vscode
+
+/geometry
+/input
+/parameters
+/build
+/algo/external

.gitignore

 # exclude top level directories
 # which are taken from other git repositories
 # The / at the beginning is important, otherwise all directories
-# containing the string are ignored 
+# containing the string are ignored
 /geometry
 /input
 /parameters
+/qa_data
 /build
+/algo/external
 
 # Comment some single files
 Dart*.cfg
+
+# gdb Crash dumps
+**/core_dump_*
+
+# Git rebase backoup files
+**/*.orig
+
+# IDEs
+.vscode

.gitlab-ci.yml

 stages:
-  - check
+  - checkRepository
+  - checkFormat
   - build
+  - package
+  - verify
+  - finalise
   - documentation
-  
-CbmRoot_Continuous:
-  stage: build
+
+RebaseCheck:
+  stage: checkRepository
+  variables:
+    GIT_DEPTH: 200
+  image: alpine
   tags:
-    - CbmRoot
+    - docker
   only:
     refs:
-      - master
+      - merge_requests
     variables:
-      - $CI_PROJECT_PATH == "computing/cbmroot"
-  cache:
-    paths:
-      - build/
-      - external/DataTree/
-      - external/DataTreeQA/
-      - external/KFParticle/
-      - external/NicaFemto/
-      - external/Vc/
-      - external/cppzmq/
-      - external/flib_dpb/flib_dpb/
-      - external/flib_dpb_20/
-      - external/ipc/ipc/
-      - external/ipc_legacy/ipc/
-      - external/jsroot/
-      - external/spadic/spadic/
-      - input
-      - geometry
-      - parameters
+      - $CI_MERGE_REQUEST_PROJECT_PATH == "computing/cbmroot" && $CI_MERGE_REQUEST_TARGET_BRANCH_NAME == "master"
+      - $CI_MERGE_REQUEST_PROJECT_PATH == "computing/cbmroot" && $CI_MERGE_REQUEST_TARGET_BRANCH_NAME =~ /^DC_.*$/
   script:
-    - set -xv
-    - mkdir -p build 
-    - cd build
-    - find . -name "*.root" -delete
-    - find . -name "*_ok" -delete
-    - find . -name "all_*.par" -delete
-    - cd ..
-    - echo "export LINUX_FLAVOUR=Debian8.11" >> Dart.cfg
-    - echo "export FAIRSOFT_VERSION=jun19p1" >> Dart.cfg
-    - echo "export FAIRROOT_VERSION=v18.2.0" >> Dart.cfg
-    - echo "export SIMPATH=/cvmfs/fairroot.gsi.de/fairsoft/\${FAIRSOFT_VERSION}" >> Dart.cfg
-    - echo "export FAIRROOTPATH=/cvmfs/fairroot.gsi.de/fairroot/\${FAIRROOT_VERSION}_fairsoft-\${FAIRSOFT_VERSION}" >> Dart.cfg
-    - echo "export BUILDDIR=$PWD/build" >> Dart.cfg
-    - echo "export SOURCEDIR=$PWD" >> Dart.cfg
-    - echo "export NCPU=5" >> Dart.cfg
-    - echo "export PATH=\$SIMPATH/bin:$PATH" >> Dart.cfg
-    - ls
-    - pwd
-    - cat Dart.cfg
-    - $PWD/Dart.sh Continuous Dart.cfg
-    - cd build
-    - find . -name "*.root" -delete
-    - find . -name "*_ok" -delete
-    - find . -name "all_*.par" -delete
-    - cd ..
-
-FormatCheck:
-  stage: check
+    # Get the upstream repository manually. I did not find any other way to have it for
+    # comparison
+    # Check if a rebase is needed
+    # If a rebase is needed stop immediately
+    - apk update && apk add git bash
+    - scripts/connect_upstream_repo.sh $CI_MERGE_REQUEST_PROJECT_URL
+    - git fetch upstream
+    - hash1=$(git show-ref upstream/$CI_MERGE_REQUEST_TARGET_BRANCH_NAME | cut -f1 -d' ')
+    - hash2=$(git merge-base upstream/$CI_MERGE_REQUEST_TARGET_BRANCH_NAME HEAD)
+    - echo "${hash1}"
+    - echo "${hash2}"
+    - if [ "${hash1}" = "${hash2}" ]; then
+    -   echo "No rebase required"
+    -   exit 0
+    - else
+    -   echo "The Merge Request is not up-to-date"
+    -   echo "Rebase is required"
+    -   exit 1
+    - fi
+
+LinearHistCheck:
+  stage: checkRepository
+  variables:
+    GIT_DEPTH: 200
+  image: alpine
   tags:
-    - CbmRoot
+    - docker
   only:
     refs:
       - merge_requests
     variables:
       - $CI_MERGE_REQUEST_PROJECT_PATH == "computing/cbmroot" && $CI_MERGE_REQUEST_TARGET_BRANCH_NAME == "master"
+      - $CI_MERGE_REQUEST_PROJECT_PATH == "computing/cbmroot" && $CI_MERGE_REQUEST_TARGET_BRANCH_NAME =~ /^DC_.*$/
   script:
     # Get the upstream repository manually. I did not find any other way to have it for
-    # comparisson
+    # comparison
+    # Check if the history introduced by the MR is linear (no branch loop in fork)
+    # If not linear stop immediately
+    - apk update && apk add git bash
     - scripts/connect_upstream_repo.sh $CI_MERGE_REQUEST_PROJECT_URL
     - git fetch upstream
-    - echo "export FAIRSOFT_VERSION=jun19p1" > env.sh
-    - echo "export FAIRROOT_VERSION=v18.2.0" >> env.sh
-    - echo "export SIMPATH=/cvmfs/fairroot.gsi.de/fairsoft/\${FAIRSOFT_VERSION}" >> env.sh
-    - echo "export FAIRROOTPATH=/cvmfs/fairroot.gsi.de/fairroot/\${FAIRROOT_VERSION}_fairsoft-\${FAIRSOFT_VERSION}" >> env.sh
+    - count=$(git rev-list --min-parents=2 --count upstream/$CI_MERGE_REQUEST_TARGET_BRANCH_NAME..HEAD)
+    - echo "${count}"
+    - if [ 0 = "${count}" ]; then
+    -   echo "History introduced in fork is linear"
+    -   exit 0
+    - else
+    -   echo "History introduced in fork is not linear"
+    -   echo "${count} merge commits must be removed or the other new commits have to be replayed in a new branch"
+    -   exit 1
+    - fi
+
+CodeFormatCheck:
+  stage: checkFormat
+  tags:
+    - CbmRoot_apptainer
+  only:
+    refs:
+      - merge_requests
+    variables:
+      - $CI_MERGE_REQUEST_PROJECT_PATH == "computing/cbmroot" && $CI_MERGE_REQUEST_TARGET_BRANCH_NAME == "master"
+      - $CI_MERGE_REQUEST_PROJECT_PATH == "computing/cbmroot" && $CI_MERGE_REQUEST_TARGET_BRANCH_NAME =~ /^DC_.*$/
+  script:
+    # Get the upstream repository manually. I did not find any other way to have it for
+    # comparison
+    - scripts/connect_upstream_repo.sh $CI_MERGE_REQUEST_PROJECT_URL
+    - git fetch upstream
+    - echo "export FAIRSOFT_VERSION=apr21p2" > env.sh
+    - echo "export FAIRROOT_VERSION=v18.6.7" >> env.sh
+    - echo "export SIMPATH=/cvmfs/fairsoft.gsi.de/debian10/fairsoft/\${FAIRSOFT_VERSION}" >> env.sh
+    - echo "export FAIRROOTPATH=/cvmfs/fairsoft.gsi.de/debian10/fairroot/\${FAIRROOT_VERSION}_fs_\${FAIRSOFT_VERSION}" >> env.sh
     - echo "export BUILDDIR=$PWD/build" >> env.sh
     - echo "export SOURCEDIR=$PWD" >> env.sh
-    - echo "export PATH=/cvmfs/fairroot.gsi.de/clang-format-8.0.1:\$SIMPATH/bin:$PATH:/cvmfs/it.gsi.de/compiler/llvm/6.0.1/bin/" >> env.sh
+    - echo "export PATH=/cvmfs/cbm.gsi.de/debian10/clang-format-11.0.0/bin:\$SIMPATH/bin:$PATH" >> env.sh
     - echo "export LABEL=format-check_MR-\${CI_MERGE_REQUEST_IID}" >> env.sh
     - echo "export FAIRROOT_FORMAT_BASE=upstream/\${CI_MERGE_REQUEST_TARGET_BRANCH_NAME}" >> env.sh
     - . ./env.sh && ctest -S cmake/scripts/checkformat.cmake -VV
+  variables:
+    CONTAINER: "/cvmfs/vae.gsi.de/debian10/containers/user_container-production.sif"
+    OS: debian10
+#    FAIRSOFT_VERSION: nov22p1
+#    FAIRROOT_VERSION: v18.8.0
+#    BASE_PATH: "/opt"
+#    SIMPATH: "$BASE_PATH/fairsoft/$FAIRSOFT_VERSION"
+#    FAIRROOTPATH: "$BASE_PATH/fairroot/${FAIRROOT_VERSION}_${FAIRSOFT_VERSION}"
 
-CbmRoot_Merge:
-  stage: build
+#CodeTidyCheck:
+#  stage: checkFormat
+#  tags:
+#    - CbmRoot_apptainer
+#  only:
+#    refs:
+#      - merge_requests
+#    variables:
+#      - $CI_MERGE_REQUEST_PROJECT_PATH == "computing/cbmroot" && $CI_MERGE_REQUEST_TARGET_BRANCH_NAME == "master"
+#  script:
+#    # Get the upstream repository manually. I did not find any other way to have it for
+#    # comparison
+#    - scripts/connect_upstream_repo.sh $CI_MERGE_REQUEST_PROJECT_URL
+#    - git fetch upstream
+#    - echo "export FAIRSOFT_VERSION=$FAIRSOFT_VERSION" > env.sh
+#    - echo "export FAIRROOT_VERSION=$FAIRROOT_VERSION" >> env.sh
+#    - echo "export SIMPATH=/opt/fairsoft/\${FAIRSOFT_VERSION}" >> env.sh
+#    - echo "export FAIRROOTPATH=/opt/fairroot/\${FAIRROOT_VERSION}_\${FAIRSOFT_VERSION}" >> env.sh
+#    - echo "export BUILDDIR=$PWD/build" >> env.sh
+#    - echo "export SOURCEDIR=$PWD" >> env.sh
+#    - echo "export PATH=/cvmfs/cbm.gsi.de/clang-format-11.0.0/bin:\$SIMPATH/bin:$PATH" >> env.sh
+#    - echo "export LABEL=tidy-check_MR-${CI_MERGE_REQUEST_IID}" >> env.sh
+#    - echo "export FAIRROOT_TIDY_BASE=upstream/${CI_MERGE_REQUEST_TARGET_BRANCH_NAME}" >> env.sh
+#    - echo "export NCPU=8"
+#    - . ./env.sh && ctest -S cmake/scripts/checktidy.cmake -VV
+#  after_script:
+#    - rm -rf build
+#  variables:
+#    CONTAINER: "/cvmfs/cbm.gsi.de/containers/debian12_v18.8.0_nov22p1_1.sif"
+#    OS: debian12
+#    FAIRSOFT_VERSION: nov22p1
+#    FAIRROOT_VERSION: v18.8.0
+#    BASE_PATH: "/opt"
+#    SIMPATH: "$BASE_PATH/fairsoft/$FAIRSOFT_VERSION"
+#    FAIRROOTPATH: "$BASE_PATH/fairroot/${FAIRROOT_VERSION}_${FAIRSOFT_VERSION}"
+
+FileFormatCheck:
+  stage: checkFormat
+  image: alpine
   tags:
-    - CbmRoot
+    - docker
+  only:
+    refs:
+      - merge_requests
+    variables:
+      - $CI_MERGE_REQUEST_PROJECT_PATH == "computing/cbmroot" && $CI_MERGE_REQUEST_TARGET_BRANCH_NAME == "master"
+      - $CI_MERGE_REQUEST_PROJECT_PATH == "computing/cbmroot" && $CI_MERGE_REQUEST_TARGET_BRANCH_NAME =~ /^DC_.*$/
+  script:
+    # Get the upstream repository manually. I did not find any other way to have it for
+    # comparison
+    - apk update && apk add git bash file
+    - scripts/connect_upstream_repo.sh $CI_MERGE_REQUEST_PROJECT_URL
+    - git fetch upstream
+    - scripts/check-file-format.sh upstream
+
+FileEndCheck:
+  stage: checkFormat
+  image: alpine
+  tags:
+    - docker
+  only:
+    refs:
+      - merge_requests
+    variables:
+      - $CI_MERGE_REQUEST_PROJECT_PATH == "computing/cbmroot" && $CI_MERGE_REQUEST_TARGET_BRANCH_NAME == "master"
+      - $CI_MERGE_REQUEST_PROJECT_PATH == "computing/cbmroot" && $CI_MERGE_REQUEST_TARGET_BRANCH_NAME =~ /^DC_.*$/
+  script:
+    # Get the upstream repository manually. I did not find any other way to have it for
+    # comparison
+    - apk update && apk add git bash file
+    - scripts/connect_upstream_repo.sh $CI_MERGE_REQUEST_PROJECT_URL
+    - git fetch upstream
+    - scripts/check-file-ending.sh upstream
+
+CheckForNonASCII:
+  stage: checkFormat
+  image: alpine
+  tags:
+    - docker
   only:
     refs:
       - merge_requests
     variables:
       - $CI_MERGE_REQUEST_PROJECT_PATH == "computing/cbmroot" && $CI_MERGE_REQUEST_TARGET_BRANCH_NAME == "master"
+      - $CI_MERGE_REQUEST_PROJECT_PATH == "computing/cbmroot" && $CI_MERGE_REQUEST_TARGET_BRANCH_NAME =~ /^DC_.*$/
   script:
-    - echo $CI_MERGE_REQUEST_SOURCE_PROJECT_PATH
-    - echo $CI_MERGE_REQUEST_PROJECT_PATH
+    # Get the upstream repository manually. I did not find any other way to have it for
+    # comparison
+    - apk update && apk add git bash file pcre-tools
+    - scripts/connect_upstream_repo.sh $CI_MERGE_REQUEST_PROJECT_URL
+    - git fetch upstream
+    - scripts/check-non-ascii-characters.sh upstream
+
+FileLicenceCheck:
+  stage: checkFormat
+  image: alpine
+  tags:
+    - docker
+  only:
+    refs:
+      - merge_requests
+    variables:
+      - $CI_MERGE_REQUEST_PROJECT_PATH == "computing/cbmroot" && $CI_MERGE_REQUEST_TARGET_BRANCH_NAME == "master"
+      - $CI_MERGE_REQUEST_PROJECT_PATH == "computing/cbmroot" && $CI_MERGE_REQUEST_TARGET_BRANCH_NAME =~ /^DC_.*$/
+  script:
+    # Get the upstream repository manually. I did not find any other way to have it for
+    # comparison
+    - apk update && apk add git bash file
+    - scripts/connect_upstream_repo.sh $CI_MERGE_REQUEST_PROJECT_URL
+    - git fetch upstream
+    - scripts/check-licence-header.sh upstream
+
+
+#
+# job template
+#
+.build_and_test: &build_and_test
+  timeout: 1h # Possible since Gitlab 15.7, job-level timeout can exceed project timeout but not Runner timeout
+  before_script:
     - if [ "$CI_MERGE_REQUEST_PROJECT_PATH" != "computing/cbmroot" ]; then
-    -   echo "Should not come here"
-    -   exit 1
+    -   if [ "$CI_PROJECT_PATH" != "computing/cbmroot" ]; then
+    -     echo "Should not come here"
+    -     env
+    -     exit 1
+    -   fi
+    - fi
+  script:
+    - echo "export LINUX_FLAVOUR=$OS" >> Dart.cfg
+    - echo "export SIMPATH=$SIMPATH" >> Dart.cfg
+    - echo "export FAIRROOTPATH=$FAIRROOTPATH" >> Dart.cfg
+    - if [[ -n $RAW_DATA_PATH ]]; then
+    -   echo "export RAW_DATA_PATH=$RAW_DATA_PATH" >> Dart.cfg
     - fi
-    - echo $CI_MERGE_REQUEST_TARGET_BRANCH_NAME
-    - echo $CI_MERGE_REQUEST_ID
-    - echo $CI_MERGE_REQUEST_IID
-    - echo "export LINUX_FLAVOUR=Debian8.11" >> Dart.cfg
-    - echo "export FAIRSOFT_VERSION=jun19p1" >> Dart.cfg
-    - echo "export FAIRROOT_VERSION=v18.2.0" >> Dart.cfg
-    - echo "export SIMPATH=/cvmfs/fairroot.gsi.de/fairsoft/\${FAIRSOFT_VERSION}" >> Dart.cfg
-    - echo "export FAIRROOTPATH=/cvmfs/fairroot.gsi.de/fairroot/\${FAIRROOT_VERSION}_fairsoft-\${FAIRSOFT_VERSION}" >> Dart.cfg 
     - echo "export BUILDDIR=$PWD/build" >> Dart.cfg
     - echo "export SOURCEDIR=$PWD" >> Dart.cfg
-    - echo "export NCPU=5" >> Dart.cfg
-    - echo "export PATH=\$SIMPATH/bin:$PATH" >> Dart.cfg
-    - ls
-    - pwd
-    - cat Dart.cfg
-    - $PWD/Dart.sh MergeRequest Dart.cfg
+    - if [[ -n $EXTRA_PATH ]]; then
+    -   echo "export PATH=$EXTRA_PATH:$PATH" >> Dart.cfg
+    - fi
+    - if [[ -n $EXTRA_FLAGS ]]; then
+    -   echo "export EXTRA_FLAGS=$EXTRA_FLAGS" >> Dart.cfg
+    - fi
+    - if [[ -n $INSTALL_PROJECT ]]; then
+    -   echo "export INSTALL_PROJECT=TRUE" >> Dart.cfg
+    - fi
+    - ./scripts/find_cijob_ctest_stop_time.sh Dart.cfg
+    - if [[ -n $CI_TEST_STAGE_TOTAL_TIME_LIMIT ]]; then
+    -   echo "export CI_TEST_STAGE_TOTAL_TIME_LIMIT=$CI_TEST_STAGE_TOTAL_TIME_LIMIT"  >> Dart.cfg
+    - fi
+    - if [[ -n $CONFIGFILE ]]; then
+    -   source $CONFIGFILE $FAIRSOFT_VERSION
+    - fi
+    - $PWD/Dart.sh $BUILD_TYPE Dart.cfg
+  after_script:
+    - rm -rf build
+
+#
+# job element definitions
+#
+.realData_tag: &realData_tag
+  stage: build
+  tags:
+    - CbmRoot_realData
+
+.realData_variables: &realData_variables
+    OS: "Debian12"
+    NCPU: 16
+    RAW_DATA_PATH: "/opt/cbmsoft/beamtime-test-data/reduced/"
+    FAIRSOFT_VERSION: "apr21p2"
+    FAIRROOT_VERSION: "v18.6.7"
+    BASE_PATH: "/opt/"
+    SIMPATH: "$BASE_PATH/fairsoft/$FAIRSOFT_VERSION"
+    FAIRROOTPATH: "$BASE_PATH/fairroot/${FAIRROOT_VERSION}_${FAIRSOFT_VERSION}"
+    CHECK_GEO_HASH_CHANGE: "1"
+    CI_TEST_STAGE_TOTAL_TIME_LIMIT: 1500 # in seconds = 25 minutes
+
+.apptainer_tag: &apptainer_tag
+  stage: build
+  tags:
+    - CbmRoot_apptainer
+
+.apptainer_vae23_variables_apr21: &apptainer_vae23_variables_apr21
+    CONTAINER: "/cvmfs/vae.gsi.de/vae23/containers/user_container-production.sif"
+    OS: vae23
+    FAIRSOFT_VERSION: apr21p2
+    FAIRROOT_VERSION: v18.6.7
+    BASE_PATH: "/cvmfs/fairsoft.gsi.de/debian10/"
+    SIMPATH: "$BASE_PATH/fairsoft/$FAIRSOFT_VERSION"
+    FAIRROOTPATH: "$BASE_PATH/fairroot/${FAIRROOT_VERSION}_fs_${FAIRSOFT_VERSION}"
+    CONFIGFILE: "/cvmfs/cbm.gsi.de/debian10/bin/setup_development_environment.sh"
+    INSTALL_PROJECT: "TRUE"
+    EXTRA_FLAGS: '"-DCBM_TEST_INSTALL=TRUE"'
+
+.apptainer_vae23_variables_nov22p1: &apptainer_vae23_variables_nov22p1
+    CONTAINER: "/cvmfs/vae.gsi.de/vae23/containers/user_container-production.sif"
+    OS: vae23
+    FAIRSOFT_VERSION: nov22p1
+    FAIRROOT_VERSION: v18.8.0
+    BASE_PATH: "/cvmfs/fairsoft.gsi.de/debian10/"
+    SIMPATH: "$BASE_PATH/fairsoft/$FAIRSOFT_VERSION"
+    FAIRROOTPATH: "$BASE_PATH/fairroot/${FAIRROOT_VERSION}_fs_${FAIRSOFT_VERSION}"
+    CONFIGFILE: "/cvmfs/cbm.gsi.de/debian10/bin/setup_development_environment.sh"
+    INSTALL_PROJECT: "TRUE"
+    EXTRA_FLAGS: '"-DCBM_TEST_INSTALL=TRUE"'
+
+.apptainer_vae24_variables_nov22p3: &apptainer_vae24_variables_nov22p3
+    CONTAINER: "/cvmfs/vae.gsi.de/vae24/containers/user_container-production.sif"
+    OS: vae24
+    FAIRSOFT_VERSION: nov22p3
+    FAIRROOT_VERSION: v18.8.0
+    BASE_PATH: "/cvmfs/fairsoft.gsi.de/debian11/"
+    SIMPATH: "$BASE_PATH/fairsoft/$FAIRSOFT_VERSION"
+    FAIRROOTPATH: "$BASE_PATH/fairroot/${FAIRROOT_VERSION}_${FAIRSOFT_VERSION}"
+    CONFIGFILE: "/cvmfs/cbm.gsi.de/debian11/bin/setup_development_environment.sh"
+    INSTALL_PROJECT: "TRUE"
+    EXTRA_FLAGS: '"-DCBM_TEST_INSTALL=TRUE"'
+
+.apptainer_vae24_variables_jan24p1: &apptainer_vae24_variables_jan24p1
+    CONTAINER: "/cvmfs/vae.gsi.de/vae24/containers/user_container-production.sif"
+    OS: vae24
+    FAIRSOFT_VERSION: jan24p1
+    FAIRROOT_VERSION: v18.8.2
+    BASE_PATH: "/cvmfs/fairsoft.gsi.de/debian11/"
+    SIMPATH: "$BASE_PATH/fairsoft/$FAIRSOFT_VERSION"
+    FAIRROOTPATH: "$BASE_PATH/fairroot/${FAIRROOT_VERSION}_${FAIRSOFT_VERSION}"
+    CONFIGFILE: "/cvmfs/cbm.gsi.de/debian11/bin/setup_development_environment.sh"
+    INSTALL_PROJECT: "TRUE"
+    EXTRA_FLAGS: '"-DCBM_TEST_INSTALL=TRUE"'
+
+.apptainer_debian11_variables_apr21: &apptainer_debian11_variables_apr21
+    CONTAINER: "/cvmfs/cbm.gsi.de/containers/debian11_v18.6.7_apr21p2_1.sif"
+    OS: debian11
+    FAIRSOFT_VERSION: apr21p2
+    FAIRROOT_VERSION: v18.6.7
+    BASE_PATH: "/opt/"
+    SIMPATH: "$BASE_PATH/fairsoft/${FAIRSOFT_VERSION}"
+    FAIRROOTPATH: "$BASE_PATH/fairroot/${FAIRROOT_VERSION}_${FAIRSOFT_VERSION}"
+    INSTALL_PROJECT: "TRUE"
+    EXTRA_FLAGS: '"-DCBM_TEST_INSTALL=TRUE"'
+
+.apptainer_debian12_variables_nov22p1: &apptainer_debian12_variables_nov22p1
+    CONTAINER: "/cvmfs/cbm.gsi.de/containers/debian12_v18.8.0_nov22p1_2.sif"
+    OS: debian12
+    FAIRSOFT_VERSION: nov22p1
+    FAIRROOT_VERSION: v18.8.0
+    BASE_PATH: "/opt"
+    SIMPATH: "$BASE_PATH/fairsoft/$FAIRSOFT_VERSION"
+    FAIRROOTPATH: "$BASE_PATH/fairroot/${FAIRROOT_VERSION}_${FAIRSOFT_VERSION}"
+    INSTALL_PROJECT: "TRUE"
+    EXTRA_FLAGS: '"-DCBM_TEST_INSTALL=TRUE"'
+
+.linux_tag: &linux_tag
+  stage: build
+  tags:
+    - CbmRoot
+  # Possible since Gitlab 15.7, job-level timeout can exceed project timeout but not Runner timeout
+  timeout: 1h 30m # Continuous tests after merge need more time than the pre-merge CI
+
+.linux_variables: &linux_variables
+    OS: "Debian12"
+    NCPU: 5
+    FAIRSOFT_VERSION: "nov22p1"
+    FAIRROOT_VERSION: "v18.8.0"
+    BASE_PATH: "/cvmfs/fairsoft.gsi.de/debian12"
+    SIMPATH: "$BASE_PATH/fairsoft/$FAIRSOFT_VERSION"
+    FAIRROOTPATH: "$BASE_PATH/fairroot/${FAIRROOT_VERSION}_fs_${FAIRSOFT_VERSION}"
+    EXTRA_PATH: "${SIMPATH}/bin"
+    CI_TEST_STAGE_TOTAL_TIME_LIMIT: 1800 # in seconds = 30 m, Continuous tests after merge need longer than pre-merge CI
+
+.macosx_tag: &macosx_tag
+  stage: build
+  tags:
+    - qemu_macosx
+
+.macosx_13_variables_nov22p1: &macosx_13_variables_nov22p1
+    OS: "macOS13"
+    FAIRSOFT_VERSION: "nov22p1"
+    FAIRROOT_VERSION: "v18.8.0"
+    BASE_PATH: "/opt"
+    SIMPATH: "$BASE_PATH/fairsoft/$FAIRSOFT_VERSION"
+    FAIRROOTPATH: "$BASE_PATH/fairroot/${FAIRROOT_VERSION}_${FAIRSOFT_VERSION}"
+    IMAGE_NAME: "${OS}_${FAIRROOT_VERSION}_${FAIRSOFT_VERSION}"
+    EXTRA_PATH: /usr/local/bin
+
+.macosx_12_variables_nov22p1: &macosx_12_variables_nov22p1
+    OS: "macOS12"
+    FAIRSOFT_VERSION: "nov22p1"
+    FAIRROOT_VERSION: "v18.8.0"
+    BASE_PATH: "/opt"
+    SIMPATH: "$BASE_PATH/fairsoft/$FAIRSOFT_VERSION"
+    FAIRROOTPATH: "$BASE_PATH/fairroot/${FAIRROOT_VERSION}_${FAIRSOFT_VERSION}"
+    IMAGE_NAME: "${OS}_${FAIRROOT_VERSION}_${FAIRSOFT_VERSION}"
+    EXTRA_PATH: /usr/local/bin
+
+.macosx_11_variables_nov22p1: &macosx_11_variables_nov22p1
+    OS: "macOS11"
+    FAIRSOFT_VERSION: "nov22p1"
+    FAIRROOT_VERSION: "v18.8.0"
+    BASE_PATH: "/opt"
+    SIMPATH: "$BASE_PATH/fairsoft/$FAIRSOFT_VERSION"
+    FAIRROOTPATH: "$BASE_PATH/fairroot/${FAIRROOT_VERSION}_${FAIRSOFT_VERSION}"
+    IMAGE_NAME: "${OS}_${FAIRROOT_VERSION}_${FAIRSOFT_VERSION}"
+    EXTRA_PATH: /usr/local/bin
+
+.macosx_1015_variables: &macosx_1015_variables
+    OS: "macOS1015"
+    FAIRSOFT_VERSION: "apr21p2"
+    FAIRROOT_VERSION: "v18.6.7"
+    BASE_PATH: "/opt"
+    SIMPATH: "$BASE_PATH/fairsoft/$FAIRSOFT_VERSION"
+    FAIRROOTPATH: "$BASE_PATH/fairroot/${FAIRROOT_VERSION}_${FAIRSOFT_VERSION}"
+    IMAGE_NAME: "${OS}_${FAIRROOT_VERSION}_${FAIRSOFT_VERSION}"
+    EXTRA_PATH: /usr/local/bin
+
+.macosx_12_variables: &macosx_12_variables
+    OS: "macOS12"
+    FAIRSOFT_VERSION: "apr21p2"
+    FAIRROOT_VERSION: "v18.6.7"
+    BASE_PATH: "/opt"
+    SIMPATH: "$BASE_PATH/fairsoft/$FAIRSOFT_VERSION"
+    FAIRROOTPATH: "$BASE_PATH/fairroot/${FAIRROOT_VERSION}_${FAIRSOFT_VERSION}"
+    IMAGE_NAME: "${OS}_${FAIRROOT_VERSION}_${FAIRSOFT_VERSION}"
+    EXTRA_PATH: /usr/local/bin
+
+.macosx_11_variables: &macosx_11_variables
+    OS: "macOS11"
+    FAIRSOFT_VERSION: "apr21p2"
+    FAIRROOT_VERSION: "v18.6.7"
+    BASE_PATH: "/opt"
+    SIMPATH: "$BASE_PATH/fairsoft/$FAIRSOFT_VERSION"
+    FAIRROOTPATH: "$BASE_PATH/fairroot/${FAIRROOT_VERSION}_${FAIRSOFT_VERSION}"
+    IMAGE_NAME: "${OS}_${FAIRROOT_VERSION}_${FAIRSOFT_VERSION}"
+    EXTRA_PATH: /usr/local/bin
+
+.mergeVariables: &mergeVariables
+    BUILD_TYPE: "Continuous"
+
+.mergeRequestVariables: &mergeRequestVariables
+    BUILD_TYPE: "MergeRequest"
+
+.check_merge_request: &check_merge_request
+  only:
+    refs:
+      - merge_requests
+    variables:
+      - $CI_MERGE_REQUEST_PROJECT_PATH == "computing/cbmroot" && $CI_MERGE_REQUEST_TARGET_BRANCH_NAME == "master"
+
+.check_merge: &check_merge
+  only:
+    refs:
+      - master
+    variables:
+      - $CI_PROJECT_PATH == "computing/cbmroot"
+
+#
+# job matrix for build jobs
+#
+
+CbmRoot_Merge_realData:
+  <<: [*realData_tag, *check_merge_request, *build_and_test]
+  variables:
+    <<: [*mergeRequestVariables, *realData_variables]
+
+CbmRoot_Merge_Apptainer_debian12_nov22p1:
+  <<: [*apptainer_tag, *check_merge_request, *build_and_test]
+  variables:
+    <<: [*mergeRequestVariables, *apptainer_debian12_variables_nov22p1]
+
+CbmRoot_Merge_Apptainer_debian11_apr21:
+  <<: [*apptainer_tag, *check_merge_request, *build_and_test]
+  variables:
+    <<: [*mergeRequestVariables, *apptainer_debian11_variables_apr21]
+
+CbmRoot_Merge_Apptainer_vae23_apr21:
+  <<: [*apptainer_tag, *check_merge_request, *build_and_test]
+  variables:
+    <<: [*mergeRequestVariables, *apptainer_vae23_variables_apr21]
+
+CbmRoot_Merge_Apptainer_vae23_nov22p1:
+  <<: [*apptainer_tag, *check_merge_request, *build_and_test]
+  variables:
+    <<: [*mergeRequestVariables, *apptainer_vae23_variables_nov22p1]
+
+CbmRoot_Merge_Apptainer_vae24_nov22p3:
+  <<: [*apptainer_tag, *check_merge_request, *build_and_test]
+  variables:
+    <<: [*mergeRequestVariables, *apptainer_vae24_variables_nov22p3]
+
+CbmRoot_Merge_Apptainer_vae24_jan24p1:
+  <<: [*apptainer_tag, *check_merge_request, *build_and_test]
+  variables:
+    <<: [*mergeRequestVariables, *apptainer_vae24_variables_jan24p1]
+
+CbmRoot_Merge_macosx_13_nov22p1:
+  <<: [*macosx_tag, *check_merge_request, *build_and_test]
+  variables:
+    <<: [*mergeRequestVariables, *macosx_13_variables_nov22p1]
+
+CbmRoot_Merge_macosx_12_nov22p1:
+  <<: [*macosx_tag, *check_merge_request, *build_and_test]
+  variables:
+    <<: [*mergeRequestVariables, *macosx_12_variables_nov22p1]
+
+CbmRoot_Merge_macosx_11_nov22p1:
+  <<: [*macosx_tag, *check_merge_request, *build_and_test]
+  variables:
+    <<: [*mergeRequestVariables, *macosx_11_variables_nov22p1]
+
+CbmRoot_Merge_macosx_1015:
+  <<: [*macosx_tag, *check_merge_request, *build_and_test]
+  variables:
+    <<: [*mergeRequestVariables, *macosx_1015_variables]
+
+CbmRoot_Merge_macosx_11:
+  <<: [*macosx_tag, *check_merge_request, *build_and_test]
+  variables:
+    <<: [*mergeRequestVariables, *macosx_11_variables]
+
+CbmRoot_Merge_macosx_12:
+  <<: [*macosx_tag, *check_merge_request, *build_and_test]
+  variables:
+    <<: [*mergeRequestVariables, *macosx_12_variables]
+
+CbmRoot_Continuous:
+  <<: [*linux_tag, *check_merge, *build_and_test]
+  variables:
+    <<: [*mergeVariables, *linux_variables]
+
+BuildOnlineContainerMR:
+  stage: package
+  only:
+    refs:
+      - merge_requests
+    variables:
+      - $CI_MERGE_REQUEST_PROJECT_PATH == "computing/cbmroot" && $CI_MERGE_REQUEST_TARGET_BRANCH_NAME == "master"
+  needs:
+    - CodeFormatCheck
+    - FileFormatCheck
+    - FileEndCheck
+    - FileLicenceCheck
+  tags:
+    - docker
+  image:
+    name: $CI_REGISTRY/computing/images/base/kaniko/executor:v1.20.1-debug
+    entrypoint: [""]
+  variables:
+    IMAGE_NAME: $CI_REGISTRY_IMAGE/cbm_online
+    IMAGE_TAG: mr$CI_MERGE_REQUEST_IID
+    DOCKERFILE: $CI_PROJECT_DIR/.ci/online/Dockerfile
+  script:
+    - mkdir -p /kaniko/.docker
+    - echo "{\"auths\":{\"$CI_REGISTRY\":{\"username\":\"$CI_REGISTRY_USER\",\"password\":\"$CI_REGISTRY_PASSWORD\"}}}" > /kaniko/.docker/config.json
+    - /kaniko/executor --context dir://$CI_PROJECT_DIR --dockerfile $DOCKERFILE --destination $IMAGE_NAME:$IMAGE_TAG
+    # Cache settings suggested by Copilot: --cache=true --cache-repo=${IMAGE_NAME} --cache-ttl=168h --cache-shared=true --cache-dir=/cache
+    # TODO: Test if these work
+
+# Ensure the container we just build is usable, and not missing any dependencies
+VerifyOnlineContainerMR:
+  stage: verify
+  only:
+    refs:
+      - merge_requests
+    variables:
+      - $CI_MERGE_REQUEST_PROJECT_PATH == "computing/cbmroot" && $CI_MERGE_REQUEST_TARGET_BRANCH_NAME == "master"
+  needs:
+    - BuildOnlineContainerMR
+  tags:
+    - docker
+  variables:
+    IMAGE_NAME: $CI_REGISTRY_IMAGE/cbm_online
+    IMAGE_TAG: mr$CI_MERGE_REQUEST_IID
+  image: $IMAGE_NAME:$IMAGE_TAG
+  script:
+    - cbmreco --help
+
+# Create container for master and DC_* branches on merge
+BuildOnlineContainerBranch:
+  stage: package
+  only:
+    - master@computing/cbmroot
+    - nightly_master@computing/cbmroot
+    - /^DC_.*$/@computing/cbmroot
+  needs: [] # Don't wait for continuous build, start immediately
+  tags:
+    - docker
+  image:
+    name: $CI_REGISTRY/computing/images/base/kaniko/executor:v1.20.1-debug
+    entrypoint: [""]
+  variables:
+    IMAGE_NAME: $CI_REGISTRY_IMAGE/cbm_online
+    IMAGE_TAG: $CI_COMMIT_BRANCH
+    DOCKERFILE: $CI_PROJECT_DIR/.ci/online/Dockerfile
+  script:
+    - mkdir -p /kaniko/.docker
+    - echo "{\"auths\":{\"$CI_REGISTRY\":{\"username\":\"$CI_REGISTRY_USER\",\"password\":\"$CI_REGISTRY_PASSWORD\"}}}" > /kaniko/.docker/config.json
+    - /kaniko/executor --context dir://$CI_PROJECT_DIR --dockerfile $DOCKERFILE --destination $IMAGE_NAME:$IMAGE_TAG
+
+VerifyOnlineContainerBranch:
+  stage: verify
+  only:
+    - master@computing/cbmroot
+    - nightly_master@computing/cbmroot
+    - /^DC_.*$/@computing/cbmroot
+  needs:
+    - BuildOnlineContainerBranch
+  tags:
+    - docker
+  variables:
+    IMAGE_NAME: $CI_REGISTRY_IMAGE/cbm_online
+    IMAGE_TAG: $CI_COMMIT_BRANCH
+  image: $IMAGE_NAME:$IMAGE_TAG
+  script:
+    - cbmreco --help
+
+InformCodeOwners:
+  stage: finalise
+  tags:
+    - Code_Owners
+  only:
+    refs:
+      - merge_requests
+    variables:
+      - $CI_MERGE_REQUEST_PROJECT_PATH == "computing/cbmroot" && $CI_MERGE_REQUEST_TARGET_BRANCH_NAME == "master"
+  script:
+    # Get the upstream repository manually. I did not find any other way to have it for
+    # comparison
+    - scripts/connect_upstream_repo.sh $CI_MERGE_REQUEST_PROJECT_URL
+    - git fetch upstream
+    - scripts/inform_codeowners.sh upstream
 
 pages:
   stage: documentation
@@ -121,11 +642,12 @@ pages:
   tags:
     - docker
   script:
-    - apk update && apk add doxygen
+    - apk update && apk add doxygen graphviz
     - doxygen doxygen/cbmDoxyfile.conf
     - mv html-doc/html public/
   artifacts:
+    expire_in: 1 day
     paths:
       - public
   only:
-    - doxygen
+    - nightly_master

CMakeLists.txt

 # The name of our project is "CBMROOT".  CMakeLists files in this project can
-
 # refer to the root source directory of the project as ${CBMROOT_SOURCE_DIR} or
 # as ${CMAKE_SOURCE_DIR} and to the root binary directory of the project as
 # ${CBMROOT_BINARY_DIR} or ${CMAKE_BINARY_DIR}.
-# This difference is important for the base classes which are in CBMROOT
-# and PANDAROOT.
 
 # Check if cmake has the required version
-# For the CTest fixtures at least CMake 3.7.2 is needed.
-# Since NicaFempto requires 3.11.0 we should be consistent while we
+# Since flesnet requires 3.14.0 we should be consistent while we
 # build it in the CbmRoot context
-CMAKE_MINIMUM_REQUIRED(VERSION 3.11.0 FATAL_ERROR)
+cmake_minimum_required(VERSION 3.14.0 FATAL_ERROR)
+cmake_policy(VERSION 3.14...3.23)
+
+# Define compiler on macosx to avoid problems when comparing to compilers
+# used for FairSoft/FairRoot compilation
+if(APPLE)
+  if(NOT DEFINED CMAKE_C_COMPILER)
+    set(CMAKE_C_COMPILER clang)
+  endif()
+  if(NOT DEFINED CMAKE_CXX_COMPILER)
+    set(CMAKE_CXX_COMPILER clang++)
+  endif()
+endif()
 
-# Set name of our project to "CBMROOT". Has to be done
-# after check of cmake version
-project(CBMROOT)
+# Default CMake settings
+set(CMAKE_EXPORT_COMPILE_COMMANDS ON)
+set(CMAKE_CXX_STANDARD 17)
+set(CMAKE_CXX_EXTENSIONS OFF)
 
-FIND_PATH(FAIRBASE NAMES FairRun.h  PATHS
-  ${CBMBASE_DIR}/steer
-  NO_DEFAULT_PATH
+# Set the library version in the main CMakeLists.txt
+set(CBMROOT_MAJOR_VERSION 22)
+set(CBMROOT_MINOR_VERSION 2)
+set(CBMROOT_PATCH_VERSION 99)
+
+execute_process(
+COMMAND bash "-c" "cd ${CMAKE_SOURCE_DIR} && git log | head -n 1 | sed 's_commit \\(.[^ ]*\\)_\\1_' && cd ${OLDPWD}"
+OUTPUT_VARIABLE CBMROOT_BUILD_HASH
+OUTPUT_STRIP_TRAILING_WHITESPACE)
+
+execute_process(
+COMMAND bash "-c" "cd ${CMAKE_SOURCE_DIR} && git log | sed -n '3 s/Date:[ ]*//p' && cd ${OLDPWD}"
+OUTPUT_VARIABLE CBMROOT_BUILD_HASH_DATE
+OUTPUT_STRIP_TRAILING_WHITESPACE)
+
+message("CBMROOT BUILD HASH is ${CBMROOT_BUILD_HASH} dated on ${CBMROOT_BUILD_HASH_DATE}.")
+
+# Set name of our project to "CBMROOT"
+# This also sets ${CBMROOT_VERSION} to the provided VERSION value, which would be empty if not set here explicitly
+project(CBMROOT
+        VERSION ${CBMROOT_MAJOR_VERSION}.${CBMROOT_MINOR_VERSION}.${CBMROOT_PATCH_VERSION}
+        LANGUAGES C CXX
 )
 
-If (FAIRBASE)
-  Message(STATUS "Found FAIRBASE")
-  SET(FAIRBASE ${FAIRBASE})
-Else (FAIRBASE)
-  Message(STATUS "NOT Found FAIRBASE")
-  IF(NOT DEFINED ENV{FAIRROOTPATH})
-     MESSAGE(FATAL_ERROR "You did not define the environment variable FAIRROOTPATH which is needed to find FairRoot. Please set this variable and execute cmake again.")
-  ENDIF(NOT DEFINED ENV{FAIRROOTPATH})
-  SET(FAIRROOTPATH $ENV{FAIRROOTPATH})
-
-EndIf (FAIRBASE)
-
 # where to look first for cmake modules, before ${CMAKE_ROOT}/Modules/
 # is checked
-set(CMAKE_MODULE_PATH "${FAIRROOTPATH}/share/fairbase/cmake/modules_old" ${CMAKE_MODULE_PATH})
-set(CMAKE_MODULE_PATH "${FAIRROOTPATH}/share/fairbase/cmake/modules"  ${CMAKE_MODULE_PATH})
-set(CMAKE_MODULE_PATH "${CMAKE_SOURCE_DIR}/cmake/modules" ${CMAKE_MODULE_PATH})
-
-set(CMAKE_PREFIX_PATH "$ENV{SIMPATH}/share/cmake/ZeroMQ" ${CMAKE_PREFIX_PATH})
-
-# Check if the compiler support specific C++11 features
-# Up to now this is only a check since the code does not use
-# any of the features of the new standard
-
-IF(FAIRROOTPATH)
-  Set(CheckSrcDir "${FAIRROOTPATH}/share/fairbase/cmake/checks")
-ELSE(FAIRROOTPATH)
-  Set(CheckSrcDir "${CMAKE_SOURCE_DIR}/cmake/checks")
-ENDIF(FAIRROOTPATH)
-
-if(FAIRROOTPATH)
-  find_package(FairRoot)
-  SET(MY_ROOT_INCLUDE_PATH ${FAIRROOT_INCLUDE_DIR})
-  If(CMAKE_INSTALL_PREFIX)
-     Message("***** HERE *****")
-     SET(MY_ROOT_INCLUDE_PATH 
-         ${MY_ROOT_INCLUDE_PATH} 
-         "${CMAKE_INSTALL_PREFIX}/include" 
-         "${CMAKE_INSTALL_PREFIX}/include/mvd"
-         "${CMAKE_INSTALL_PREFIX}/include/littrack"
-         "${CMAKE_INSTALL_PREFIX}/include/KF"
-        )
-  EndIf(CMAKE_INSTALL_PREFIX)
-endif(FAIRROOTPATH)
-
-include(CheckCXX11Features)
-
-
-# Load some basic macros which are needed later on
+set(CMAKE_MODULE_PATH "${CMAKE_SOURCE_DIR}/cmake")
+
+
+
+# Load some basic cmake functionality
+include(ExternalProject)
+include(CTest)
+
+# Make the CbmRoot cmake functions available
+list(PREPEND CMAKE_MODULE_PATH "${CMAKE_SOURCE_DIR}/cmake/modules")
+include(CbmChecks)
+include(CbmGenerateConfig)
 include(CbmMacros)
+include(CbmTargets)
+include(CbmCompilerSettings)
+
 include(FairMacros)
 include(WriteConfigFile)
-include(CTest)
 include(CheckCompiler)
-Include(ExternalProject)
 
-# CbmRoot uses from 22.07.15 C++11, so we need an compiler which supports C++11
-# Check if the used compiler support C++11. If not stop with an error message
-# Check also if FairSoft and FairRoot have been compiled with C++11 support
-If(NOT _HAS_CXX11_FLAG)
-  Message(FATAL_ERROR "The used C++ compiler (${CMAKE_CXX_COMPILER}) does not support C++11. CbmRoot can only be compiled with compilers supporting C++11. Please install such an compiler.")
-EndIf()
+include(WriteGeant4Data_jupy)
+include(WriteKernelFile)
 
-Execute_process(COMMAND $ENV{SIMPATH}/bin/fairsoft-config --cxxflags OUTPUT_VARIABLE _res_fairsoft_config OUTPUT_STRIP_TRAILING_WHITESPACE)
-String(FIND ${_res_fairsoft_config} "-std=c++11" POS_C++11)
-If(${POS_C++11} EQUAL -1)
-  Message(FATAL_ERROR "FairSoft wasn't compiled with c++11 support. Please recompile FairSoft with a compiler which supports c++11.")
-EndIf()
+# Do some basic checks
+# out-of-source build, unix system and
+# existence of FAIRROOTPATH and SIMPATH variables
+Check_Prerequisites()
 
-Execute_process(COMMAND $ENV{SIMPATH}/bin/fairsoft-config --root-version OUTPUT_VARIABLE _res_root_version OUTPUT_STRIP_TRAILING_WHITESPACE)
-String(FIND ${_res_root_version} "Usage" POS_USAGE)
-If(${POS_USAGE} EQUAL 1)
-  Message(FATAL_ERROR "FairSoft version to old. At least nov15 compiled with ROOT6 is needed.")
-EndIf()
-If(NOT ${_res_root_version} EQUAL 6)
-  Message(FATAL_ERROR "FairSoft was not compiled with ROOT6. At least FairSoft nov15 compiled with ROOT6 is needed.")
-EndIf()
+#Fairsoft Modules Path
+list(PREPEND CMAKE_PREFIX_PATH ${SIMPATH})
 
-# Extract the FairRoot version from fairroot-config
-# The version info is of the form Major.Minor.Patch e.g. 15.11.1 and
-# is stored in the variable FairRoot_VERSION and FairSoft_VERSION
-FairRootVersion()
-FairSoftVersion()
+unset(packages)
 
-# Since 20.02.2019 CbmRoot need at least FairRoot v18.0.5 and FairSoft may18
-# Check if FairRoot and FairSoft have at least this versions
-If(FairRoot_VERSION VERSION_LESS 18.0.5)
-  Message(FATAL_ERROR "\n CbmRoot needs at least FairRoot version v18.0.5. \n You use FairRoot ${FairRoot_VERSION}. Please upgrade your FairRoot version.")
-EndIf()
-# FairSoft version 18.5.0 means may18
-If(FairSoft_VERSION VERSION_LESS 18.5.0)
-  Message(FATAL_ERROR "\n CbmRoot needs at least FairSoft version may18. \n You use FairSoft ${_fairsoft_version}. Please upgrade your FairSoft version.")
-EndIf()
+find_package(Python3)
+MESSAGE("Python3_EXECUTABLE=${Python3_EXECUTABLE}")
 
-Execute_process(COMMAND $ENV{FAIRROOTPATH}/bin/fairroot-config --fairsoft_path OUTPUT_VARIABLE _simpath OUTPUT_STRIP_TRAILING_WHITESPACE)
-Remove_Trailing_Slash($ENV{SIMPATH})
-Set(_simpath ${_ret_val})
-Remove_Trailing_Slash(${_simpath})
-Set(_fairroot_config ${_ret_val})
-String(COMPARE EQUAL ${_simpath} ${_fairroot_config}  _same_fairsoft)
-If(NOT _same_fairsoft)
-    Message(STATUS "FairSoft version used for FairRoot compilation: ${_fairroot_config}")
-    Message(STATUS "FairSoft version now (defined by SIMPATH): ${_simpath}")
-    Message(FATAL_ERROR "Both versions must be the same.")
-EndIf()
+#Searches for ROOT Package
+find_package(ROOT 6.22 CONFIG REQUIRED)
+if(ROOT_FOUND)
+  list(APPEND packages ROOT)
+endif()
 
+find_package(FairCMakeModules REQUIRED)
+include(FairFindPackage2)
+
+#Searches for FairLogger Package
+find_package2(PUBLIC FairLogger)
+# at the end after all find_package[2] calls, call once
+find_package2_implicit_dependencies()
+if(FairLogger_FOUND)
+  list(APPEND packages FairLogger)
+  set(FAIRLOGGER_INCLUDE_DIR ${FairLogger_INCDIR}/fairlogger)
+
+  # CbmRoot expects that the Logger include statement does not need any
+  # additional path in the statement
+  # The target FairLogger::FairLogger does not provide the needed info
+  # So we add the additional subdirectory here to the target
+  get_target_property(_incDirs FairLogger::FairLogger INTERFACE_INCLUDE_DIRECTORIES)
+  set_target_properties(FairLogger::FairLogger PROPERTIES
+    INTERFACE_INCLUDE_DIRECTORIES "${_incDirs}/fairlogger"
+    )
+endif()
 
-#Check the compiler and set the compile and link flags
-If(NOT CMAKE_BUILD_TYPE AND NOT CMAKE_CONFIGURATION_TYPES)
-  Set(_default_build_type FullWarnings)
-  Set(_cflags "-g -O2")
-  Set(_cxxflags "-g -O2 -Wshadow -Wall -Wextra -Wunused-variable")
-
-  String(TOUPPER ${_default_build_type} upper_build_type )
-  Set(_build_type_cxx CMAKE_CXX_FLAGS_${upper_build_type})
-  Set(_build_type_c CMAKE_C_FLAGS_${upper_build_type})
-  Set(_exe_linker_flags CMAKE_EXE_LINKER_FLAGS_${upper_build_type})
-  Set(_module_linker_flags CMAKE_MODULE_LINKER_FLAGS_${upper_build_type})
-  Set(_shared_linker_flags CMAKE_SHARED_LINKER_FLAGS_${upper_build_type})
-  Set(_static_linker_flags CMAKE_STATIC_LINKER_FLAGS_${upper_build_type})
-
-  Message("No build type defined on command line. Set the build type ${_default_build_type}")
-  Message("CXX_FLAGS: ${_cxxflags}")
-  Message("C_FLAGS: ${_cflags}")
-
-  Set(CMAKE_BUILD_TYPE ${_default_build_type} CACHE STRING "Choose the type of build." FORCE)
-  If(CMAKE_SYSTEM_NAME MATCHES Linux OR CMAKE_SYSTEM_NAME MATCHES Darwin)
-    If(CMAKE_COMPILER_IS_GNUCXX OR CMAKE_CXX_COMPILER_ID MATCHES "Clang")
-      Set(${_build_type_cxx} ${_cxxflags} CACHE STRING "Flags used by the CXX compiler during FullWarnings builds.")
-      Set(${_build_type_c} ${_cflags} CACHE STRING "Flags used by the C compiler during FullWarnings builds.")
-      Set(${_exe_linker_flags} "" CACHE STRING "Flags used by the linker during FullWarnings builds.")
-      Set(${_module_linker_flags} "" CACHE STRING "Flags used by the linker during the creation of modules during FullWarnings builds.")
-      Set(${_shared_linker_flags} "" CACHE STRING "Flags used by the linker during the creation of shared libraries during FullWarnings builds.")
-      Set(${_static_linker_flags} "" CACHE STRING "Flags used by the linker during the creation of static libraries during FullWarnings builds.")
-      mark_as_advanced(
-        ${_build_type_cxx}
-        ${_build_type_c}
-        ${_exe_linker_flags}
-        ${_module_linker_flags}
-        ${_shared_linker_flags}
-        ${_static_linker_flags}
-      )
-    EndIf()
-  EndIf()
-EndIf()
-If(CMAKE_BUILD_TYPE MATCHES CONTINUOUS)
-  Set(CMAKE_CXX_FLAGS_CONTINUOUS "-g -O2 -Wshadow -Wall -Wextra -Wunused-variable")
-  Set(CMAKE_C_FLAGS_CONTINUOUS "-g -O2")
-  Message("The build type is CONTINUOUS")
-  Message("CXX_FLAGS: ${CMAKE_CXX_FLAGS_CONTINUOUS}")
-  Message("C_FLAGS: ${CMAKE_C_FLAGS_CONTINUOUS}")
+#Searches for VMC Package
+if(ROOT_vmc_FOUND)
+  set(VMCLIB ROOT::VMC)
+  list(APPEND packages ROOT_vmc)
+else()
+  find_package2(PUBLIC VMC REQUIRED)
+  set(VMCLIB VMCLibrary)
+endif()
+if(VMC_FOUND)
+  list(APPEND packages VMC)
+endif()
+
+#Searches for FairROOT Package
+find_package(FairRoot REQUIRED)
+if(FAIRROOT_FOUND)
+  list(APPEND packages FairRoot)
+  set(FairRoot_FOUND TRUE)
+endif()
+
+
+#Searching for Boost Package
+find_package(ZeroMQ)
+if(ZeroMQ_FOUND)
+  list(APPEND packages ZeroMQ)
+endif()
+
+
+#Searching for Boost Package
+find_package(Boost CONFIG
+             COMPONENTS serialization regex filesystem log log_setup container program_options thread iostreams system
+            )
+if(Boost_FOUND)
+  list(APPEND packages Boost)
+endif()
+
+
+#Searching for Geant4 Package
+find_package(Geant4 CONFIG REQUIRED)
+if(Geant4_FOUND)
+  list(APPEND packages Geant4)
+endif()
+
+#Searching for Vc Package
+find_package(Vc 1.4.1 CONFIG REQUIRED)
+if(Vc_FOUND)
+  list(APPEND packages Vc)
+endif()
+
+#Searching for VGM Package
+find_package(VGM CONFIG REQUIRED)
+if(VGM_FOUND)
+endif()
+
+#Searching for Geant4VMC Package
+find_package(Geant4VMC CONFIG REQUIRED)
+if(Geant4VMC_FOUND)
+  list(APPEND packages Geant4VMC)
+endif()
+
+#Searching for Geant3 Package
+find_package(Geant3 CONFIG REQUIRED)
+if(Geant3_FOUND)
+  list(APPEND packages Geant3)
+endif()
+
+#Searching for SSE
+find_package(SSE REQUIRED)
+if(SSE_FOUND)
+  list(APPEND packages SSE)
+endif()
+
+#Searching for format package
+find_package(fmt CONFIG REQUIRED)
+if(fmt_FOUND)
+  list(APPEND packages fmt)
+endif()
+
+#Searching for ONNXRuntime
+find_package(ONNXRuntime CONFIG)
+if (ONNXRuntime_FOUND)
+  list(APPEND packages ONNXRuntime)
+endif()
+
+#Searching for FairMQ
+find_package(FairMQ CONFIG REQUIRED)
+if(FairMQ_FOUND)
+  list(APPEND packages FairMQ)
+  get_target_property(_inDirMQ FairMQ::FairMQ INTERFACE_INCLUDE_DIRECTORIES)
+  set_property(TARGET FairMQ::FairMQ APPEND PROPERTY INTERFACE_INCLUDE_DIRECTORIES "${_inDirMQ}/fairmq/options")
+endif()
+
+# Check if the compiler supports the needed C++ standard
+# Check for the minimum required versions of FairSoft and FairRoot
+check_external_stack()
+
+if(NOT CBM_TEST_MODEL)
+  set(CBM_TEST_MODEL Experimental)
+endif()
+# Special case for GCC 10.2.1 with Profiling enabled: optimization of L1 has to be disabled to avoid errors
+If((${CBM_TEST_MODEL} MATCHES Weekly OR ${CBM_TEST_MODEL} MATCHES Profile)
+   AND ${CMAKE_CXX_COMPILER_ID} MATCHES GNU
+   AND ${CMAKE_CXX_COMPILER_VERSION} MATCHES 10.2.1)
+  Message(STATUS "Detected Profiling build with GCC 10.2.1")
+  Message(STATUS "=> Disabling L1 optimization to avoid compilation errors")
+  Set(L1_NO_OPT ON CACHE BOOL "Detected Profiling build with GCC 10.2.1 => Disabling L1 opti to avoid comp. errors")
 EndIf()
-Check_Compiler()
-set(CMAKE_CONFIGURATION_TYPES ${CMAKE_CONFIGURATION_TYPES} "CONTINUOUS" "FullWarnings")
-#Set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -Wall -Wextra -Wshadow -Weffc++ -Wno-unused-variable -Wno-unused-parameter -Wno-sign-compare -Wno-ignored-qualifiers -Wno-overloaded-virtual")
-#Set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -Weverything -Wno-padded -Wno-global-constructors")
-#Set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -Weverything -Wno-c++98-compat -Wno-c++98-compat-pedantic -Wno-documentation -Wno-padded -Wno-global-constructors -Wno-exit-time-destructors -Wno-extra-semi -Wno-weak-vtables -Wno-unused-member-function")
-#Set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -Wdeprecated -Wunused-exception-parameter -Wconversion -Wsign-conversion -Wold-style-cast -Wshorten-64-to-32 -Wswitch-enum -Wfloat-equal -Wunreachable-code")
-#Set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -Wold-style-cast")
-
-Set(LIBRARY_OUTPUT_PATH "${CMAKE_BINARY_DIR}/lib")
+
+# Set the compiler flags
+set_compiler_flags()
+
+# Define where the produced targets are placed in the binary directory
+Set(CMAKE_LIBRARY_OUTPUT_DIRECTORY "${CMAKE_BINARY_DIR}/lib")
 Set(EXECUTABLE_OUTPUT_PATH "${CMAKE_BINARY_DIR}/bin")
 Set(INCLUDE_OUTPUT_DIRECTORY "${PROJECT_BINARY_DIR}/include")
+set(CMAKE_INSTALL_LIBDIR lib)
 
+# VMCWORKDIR is needed by the CbmRoot runtime to find macros, geometries and
+# parameters
 Set(VMCWORKDIR ${CBMROOT_SOURCE_DIR})
 
-Option(USE_PATH_INFO "Information from PATH and LD_LIBRARY_PATH are used." OFF)
-If(USE_PATH_INFO)
-  Set(PATH $ENV{PATH})
-  If (APPLE)
-    Set(LD_LIBRARY_PATH $ENV{DYLD_LIBRARY_PATH})
-  Else (APPLE)
-    Set(LD_LIBRARY_PATH $ENV{LD_LIBRARY_PATH})
-  EndIf (APPLE)
-Else(USE_PATH_INFO)
-  STRING(REGEX MATCHALL "[^:]+" PATH $ENV{PATH})
-EndIf(USE_PATH_INFO)
-
-# Check if the user wants to build the project in the source
-# directory
-CHECK_OUT_OF_SOURCE_BUILD()
-
-# Check if we are on an UNIX system. If not stop with an error
-# message
-IF(NOT UNIX)
-  MESSAGE(FATAL_ERROR "You're not on an UNIX system. The project was up to now only tested on UNIX systems, so we break here. If you want to go on please edit the CMakeLists.txt in the source directory.")
-ENDIF(NOT UNIX)
-
-#Check if necessary environment variables are set
-#If not stop execution
-if(NOT CBMROOT_MINIMAL)
-  IF(NOT DEFINED ENV{SIMPATH})
-    MESSAGE(FATAL_ERROR "You did not define the environment variable SIMPATH which is nedded to find the external packages. Please set this variable and execute cmake again.")
-  ENDIF(NOT DEFINED ENV{SIMPATH})
-  SET(SIMPATH $ENV{SIMPATH})
-else(NOT CBMROOT_MINIMAL)
-  if(NOT DEFINED ENV{ROOTSYS})
-    MESSAGE(FATAL_ERROR "You did not define the environment variable ROOTSYS which is nedded for the installation of the minimal version of CbmRoot. Please set this variable and execute cmake again.")
-  endif(NOT DEFINED ENV{ROOTSYS})
-endif(NOT CBMROOT_MINIMAL)
-
-
-# Check if the external packages are installed into a separate install
-# directory
-CHECK_EXTERNAL_PACKAGE_INSTALL_DIR()
-
-# searches for needed packages
-# REQUIRED means that cmake will stop if this packages are not found
-# For example the framework can run without GEANT4, but ROOT is
-# mandatory
-if(CBMROOT_MINIMAL)
-  MESSAGE("******* Install minimal CbmRoot Version ********")
-  find_package(ROOT 6.00.00 REQUIRED)
-else(CBMROOT_MINIMAL)
-  find_package(ROOT 6.00.00 REQUIRED)
-  find_package(GEANT3 REQUIRED)
-  find_package(GEANT4)
-  find_package(GEANT4DATA)
-  find_package(GEANT4VMC)
-  find_package(TBB)
-  find_package(SSE)
-#  find_package(IWYU)
-  find_package(ZeroMQ)
-
-  Set(Boost_NO_SYSTEM_PATHS TRUE)
-  Set(Boost_NO_BOOST_CMAKE TRUE)
-  set(BOOST_ROOT ${SIMPATH})
-  set(GSL_DIR ${SIMPATH})
-  Message("-- Looking for Boost ...")
-  # If an older version of boost is found both of the variables below are
-  # cached and in a second cmake run, a good boost version is found even
-  # if the version is to old.
-  # To overcome this problem both variables are cleared before checking
-  # for boost.
-  Unset(Boost_INCLUDE_DIR CACHE)
-  Unset(Boost_LIBRARY_DIRS CACHE)
-  find_package(Boost 1.48 COMPONENTS program_options thread system timer serialization regex log log_setup filesystem)
-  If (Boost_FOUND)
-    Set(Boost_Avail 1)
-  Else (Boost_FOUND)
-    Set(Boost_Avail 0)
-  EndIf (Boost_FOUND)
-
-  Message("-- Looking for GSL ...")
-  find_package(GSL)
-  Find_Package(FairLogger)
-  Find_Package(FairMQ)
-
-endif(CBMROOT_MINIMAL)
-
-# set a variable which should be used in all CMakeLists.txt
-# Defines all basic include directories from fairbase
-SetBasicVariables()
-
-# Add the Geant3 include directory such that ROOT can find TGeant3.h
-# Has to be done after calling SetBasicVariables, otherwise the value
-# is overwritten
-SET(ROOT_INCLUDE_PATH ${ROOT_INCLUDE_PATH} "${GEANT3_INCLUDE_DIR}")
-
-Set(BASE_INCLUDE_DIRECTORIES
-${BASE_INCLUDE_DIRECTORIES}
-${SYSTEM_INCLUDE_DIRECTORIES}
+# Set library versioning
+set(FAIRROOT_LIBRARY_PROPERTIES ${FAIRROOT_LIBRARY_PROPERTIES}
+    VERSION "${CBMROOT_VERSION}"
+    SOVERSION "${CBMROOT_MAJOR_VERSION}"
 )
 
-# Set the library version in the main CMakeLists.txt
-SET(CBMROOT_MAJOR_VERSION 0)
-SET(CBMROOT_MINOR_VERSION 0)
-SET(CBMROOT_PATCH_VERSION 0)
-SET(CBMROOT_VERSION "${CBMROOT_MAJOR_VERSION}.${CBMROOT_MINOR_VERSION}.${CBMROOT_PATCH_VERSION}")
-If(NOT ROOT_FOUND_VERSION OR ROOT_FOUND_VERSION LESS 59999)
-  SET(FAIRROOT_LIBRARY_PROPERTIES ${FAIRROOT_LIBRARY_PROPERTIES}
-      VERSION "${CBMROOT_VERSION}"
-      SOVERSION "${CBMROOT_MAJOR_VERSION}"
-      SUFFIX ".so"
-  )
-Else()
-  SET(FAIRROOT_LIBRARY_PROPERTIES ${FAIRROOT_LIBRARY_PROPERTIES}
-      VERSION "${CBMROOT_VERSION}"
-      SOVERSION "${CBMROOT_MAJOR_VERSION}"
-  )
-EndIf()
+# Searching for OpenMP + control variable prep. for config script (default behavior + override)
+find_package(OpenMP)
+set(OMP_NUM_THREADS 1)
+If(DEFINED ENV{OMP_NUM_THREADS} )
+  set(OMP_NUM_THREADS $ENV{OMP_NUM_THREADS})
+endif()
 
-SET(CBMLIBDIR ${CMAKE_BINARY_DIR}/lib)
-SET(LD_LIBRARY_PATH  ${CBMLIBDIR} ${Boost_LIBRARY_DIRS} ${LD_LIBRARY_PATH})
+set(CBMLIBDIR ${CMAKE_BINARY_DIR}/lib)
+set(LD_LIBRARY_PATH  ${CBMLIBDIR} ${SIMPATH}/lib ${LD_LIBRARY_PATH} ${FAIRROOT_LIBRARY_DIR})
+set(ROOT_INCLUDE_PATH ${FAIRROOT_INCLUDE_DIR})
 
 # Recurse into the given subdirectories.  This does not actually
 # cause another cmake executable to run.  The same process will walk through
 # the project's entire directory structure.
 
-If(CMAKE_SYSTEM_NAME MATCHES Darwin)
-  Include(CheckIncludeFile)
-  Check_Include_File("_types/_uint8_t.h" _UINT8_T_EXIST)
-EndIf()
-
 Option(BUILD_UNITTESTS "Build all unit tests and add them as new tests" ON)
 If(BUILD_UNITTESTS)
   Message("Build the unit tests.")
+  Message(STATUS "Build internal GTest")
+  Include(external/InstallGtest.cmake)
+endif()
 
-  Set(GTEST_ROOT ${SIMPATH})
-  Find_Package(GTest)
-
-EndIf(BUILD_UNITTESTS)
 
 ### Subdirectories to be compiled #####
 
-### Externals included as svn externals
+### Externals included and build from several sources
+# Must be the first subdirectory since the defined targets are needed by
+# following targets
 add_subdirectory (external)
 
+option(BUILD_FOR_TIDY "Create compile commands database needed by clang-tidy" OFF)
+# Add the default compiler include paths needed for our static standalone clang-tidy
+# binary. The paths are only added to the compilation units in the generated file
+# compile_commands.json which is used as input for clang-tidy. Without the
+# paths clang-tidy can't find the standard C and C++ header files.
+# Also add special compile options to use the scalar version of VC.
+# Otherwise hardware and compiler dependent header files may not be found.
+# Since we want to check our code and not some system headers this is
+# acceptable.
+if(BUILD_FOR_TIDY)
+  ADD_DEFINITIONS(-DVc_IMPL=Scalar)
+  set(CMAKE_CXX_STANDARD_INCLUDE_DIRECTORIES
+      ${CMAKE_CXX_IMPLICIT_INCLUDE_DIRECTORIES}
+  )
+endif()
+
 ### Base directories
 add_subdirectory (core)
+add_subdirectory (algo)
 add_subdirectory (sim)
 add_subdirectory (reco)
 add_subdirectory (analysis)
-
-### Detector directories
-add_subdirectory (mvd)
+add_subdirectory (services)
 
 ### Others
+Option(LARGE_TEST_STATISTIC "Run the test suite with large statistic (100 events)" OFF)
+
 add_subdirectory (macro)
 add_subdirectory(fles)
-If(FAIRMQ_FOUND)
+
+If(FairMQ_FOUND)
   add_subdirectory(MQ)
 EndIf()
 
 add_subdirectory(tutorials)
 
-add_custom_target(cleanlib
-                  COMMAND ${CMAKE_COMMAND} -E remove libCbm*
-                  COMMAND ${CMAKE_COMMAND} -E remove G__Cbm*
-                  WORKING_DIRECTORY "${CMAKE_BINARY_DIR}/lib"
-                 )
-
-add_custom_target(cleantest
-                  COMMAND ${CMAKE_COMMAND} -P ${CMAKE_SOURCE_DIR}/cmake/scripts/cleantest.cmake
-                 )
-
-find_package2(PRIVATE ClangFormat)
-if(ClangFormat_FOUND)
-  add_custom_target(FormatCheck
-    ${CMAKE_COMMAND} -E env FAIRROOT_GIT_CLANG_FORMAT_BIN=${GIT_CLANG_FORMAT_BIN} ${CMAKE_SOURCE_DIR}/cmake/scripts/check-format.sh
-    WORKING_DIRECTORY ${CMAKE_SOURCE_DIR}
-  )
-endif()
-
-Option(BUILD_DOXYGEN "Build Doxygen" OFF)
+option(BUILD_DOXYGEN "Build Doxygen" OFF)
 if(BUILD_DOXYGEN)
-  MESSAGE(STATUS "*** Building the Doxygen documentaion ***")
-  ADD_SUBDIRECTORY(doxygen)
-endif(BUILD_DOXYGEN)
-
-if(RULE_CHECKER_FOUND)
-
-  ADD_CUSTOM_TARGET(RULES
-     COMMAND ${RULE_CHECKER_SCRIPT1} ${CMAKE_BINARY_DIR} viol > violations.html
-     DEPENDS $ENV{ALL_RULES})
-
-endif(RULE_CHECKER_FOUND)
-
-if(IWYU_FOUND)
-
-  ADD_CUSTOM_TARGET(checkHEADERS
-     DEPENDS $ENV{ALL_HEADER_RULES}
-  )
-
-endif(IWYU_FOUND)
-
-if(NOT CBMROOT_MINIMAL)
-  WRITE_CONFIG_FILE(config.sh)
-  WRITE_CONFIG_FILE(config.csh)
-
-  SET(ROOT_INCLUDE_PATH 
-      ${ROOT_INCLUDE_PATH} 
-      "${CMAKE_INSTALL_PREFIX}/include" 
-      "${CMAKE_INSTALL_PREFIX}/include/mvd"
-      "${CMAKE_INSTALL_PREFIX}/include/littrack"
-      "${CMAKE_INSTALL_PREFIX}/include/KF"
-     )
-  SET(VMCWORKDIR ${CMAKE_INSTALL_PREFIX}/share/cbmroot)
-  WRITE_CONFIG_FILE(config.sh_install)
-  WRITE_CONFIG_FILE(config.csh_install)
-
-else(NOT CBMROOT_MINIMAL)
-  SET(FULL_CONFIG_FILE "false")
-  WRITE_CONFIG_FILE(config.sh)
-endif(NOT CBMROOT_MINIMAL)
-
-
-Install(FILES ${CMAKE_BINARY_DIR}/config.sh_install
-        DESTINATION bin
-        RENAME CbmRootConfig.sh
-       )
-
-Install(FILES ${CMAKE_BINARY_DIR}/check_system.sh
-        DESTINATION bin
-       )
+  message(STATUS "*** Building the Doxygen documentaion ***")
+  add_subdirectory(doxygen)
+endif()
 
-Install(FILES ${CMAKE_BINARY_DIR}/config.csh_install
-        DESTINATION bin
-        RENAME CbmRootConfig.csh
-       )
+# Definde additional targets
+# cleanlib: rm al Cbm libraries and dictionaries
+# cleantest: remove all files from build directory created when running ROOT macros
+# FormatCheck: execute clang-format for all changed files (needed for CI)
+define_additional_targets()
 
+# generate the needed config files to run macros from build and
+# installation directories. The later will be installed into the
+# install directory
+generate_config_files()
 
+# install the parameters, geometries and input directories
 Install(DIRECTORY geometry input parameters
         DESTINATION share/cbmroot
         PATTERN ".git" EXCLUDE)
+
+print_info()

CODEOWNERS

+# Ending a path in a `/` will specify the code owners for every file
+# nested in that directory, on any level
+/          @f.uhlig @v.friese @p.-a.loizeau
+/cmake/    @f.uhlig
+/external/ @f.uhlig
+/scripts/  @f.uhlig @p.-a.loizeau
+
+# Cleanup and proper separation needed
+/MQ/    @f.uhlig @p.-a.loizeau
+/fles/  @f.uhlig @p.-a.loizeau
+/macro/ @f.uhlig @p.-a.loizeau
+
+/macro/C2F/      @a.andronic @k.piasecki
+/macro/analysis/ @a.andronic @k.piasecki
+/macro/KF/       @se.gorbunov
+
+# Core
+/core/             @f.uhlig @v.friese @p.-a.loizeau
+/core/qa/          @se.gorbunov @s.zharko
+/core/data/test/   @f.uhlig
+/core/data/raw/    @p.-a.loizeau
+/core/base/utils/  @f.uhlig
+/core/base/report/ @f.uhlig
+/core/base/draw/   @f.uhlig
+
+# Algo
+/algo/ @d.smith @fweig
+
+# Simulation
+/sim/                    @f.uhlig @v.friese @p.-a.loizeau
+#/sim/transport/geosetup/ @e.lavrik
+
+# Reco
+/reco/              @f.uhlig @v.friese @p.-a.loizeau
+/reco/littrack/     @se.gorbunov
+/reco/L1/           @se.gorbunov @s.zharko
+/reco/eventbuilder/ @d.smith
+/reco/KF/           @se.gorbunov @s.zharko
+
+# Analysis
+/analysis/                                 @a.andronic @k.piasecki
+/analysis/PWGC2F/femtoscopy/               @wielanek_AT_if.pw.edu.pl
+/analysis/common/                          @a.andronic @k.piasecki
+/analysis/PWGHAD/                          @a.andronic @k.piasecki
+/analysis/PWGCHA/                          @a.andronic @k.piasecki
+/analysis/PWGDIL/                          @a.andronic @k.piasecki
+/analysis/PWGDIL/dielectron/pi0eta/        @c.pauly
+/analysis/PWGDIL/dielectron/papaframework/ @a_meye37_AT_uni-muenster.de
+/analysis/PWGDIL/dielectron/lmvm/          @a.andronic @k.piasecki
+/analysis/PWGDIL/dielectron/conversion/    @c.pauly
+/analysis/PWGDIL/dimuon/                   @a.andronic @k.piasecki
+
+## Detectors
+
+# TRD
+/core/data/trd/       @a.bercuci @p.kaehler
+/core/data/test/trd/  @a.bercuci @p.kaehler
+/core/detectors/trd/  @a.bercuci @p.kaehler
+/macro/trd/           @a.bercuci @p.kaehler
+/sim/detectors/trd/   @a.bercuci @p.kaehler
+/reco/detectors/trd/  @a.bercuci @p.kaehler
+/algo/detectors/trd/  @a.bercuci @p.kaehler
+
+# PSD
+/analysis/detectors/psd/ @v.friese
+/core/data/psd/          @v.friese
+/core/data/test/psd/     @v.friese
+/core/detectors/psd/     @v.friese
+/macro/psd/              @v.friese
+/sim/detectors/psd/      @v.friese
+/reco/detectors/psd/     @v.friese
+
+# FSD
+/analysis/detectors/fsd/ @dvorar10_AT_fjfi.cvut.cz
+/core/data/fsd/          @dvorar10_AT_fjfi.cvut.cz
+/core/detectors/fsd/     @dvorar10_AT_fjfi.cvut.cz
+/sim/detectors/fsd/      @dvorar10_AT_fjfi.cvut.cz
+/reco/detectors/fsd/     @dvorar10_AT_fjfi.cvut.cz
+
+# MUCH
+/core/data/much/         @v.singhal
+/core/data/test/much/    @v.singhal
+/core/detectors/much/    @v.singhal
+/macro/much/             @v.singhal
+/sim/detectors/much/     @v.singhal
+/reco/detectors/much/    @v.singhal
+/algo/detectors/much/    @v.singhal
+/macro/analysis/much/    @v.singhal
+
+# TOF
+/analysis/detectors/tof/ @n.herrmann @i.deppner
+/core/data/tof/          @n.herrmann @i.deppner
+/core/data/test/tof/     @n.herrmann @i.deppner
+/core/detectors/tof/     @n.herrmann @i.deppner
+/fles/star2019/          @n.herrmann @i.deppner
+/macro/tof/              @n.herrmann @i.deppner
+/sim/detectors/tof/      @n.herrmann @i.deppner
+/reco/detectors/tof/     @n.herrmann @i.deppner
+/MQ/eTOF/                @n.herrmann @i.deppner
+/MQ/hitbuilder/          @n.herrmann @i.deppner
+/algo/detectors/tof/     @n.herrmann @i.deppner
+
+# RICH
+/core/data/rich/      @ma.beyer
+/core/data/test/rich/ @ma.beyer
+/core/detectors/rich/ @ma.beyer
+/macro/rich/          @ma.beyer
+/sim/detectors/rich/  @ma.beyer
+/reco/detectors/rich/ @ma.beyer
+/algo/detectors/rich/ @ma.beyer
+
+# STS
+/analysis/detectors/sts/ @v.friese
+/core/data/sts/          @v.friese
+/core/data/test/sts/     @v.friese
+/core/detectors/sts/     @v.friese
+/macro/sts/              @v.friese
+/sim/detectors/sts/      @v.friese
+/reco/detectors/sts/     @v.friese
+/MQ/sts/                 @v.friese
+/algo/detectors/sts/     @v.friese
+/algo/data/sts/          @v.friese
+
+# MVD
+/reco/detectors/mvd/     @c.muentz @m.deveaux @j.stroth
+/core/detectors/mvd/     @c.muentz @m.deveaux @j.stroth
+/core/data/mvd/          @c.muentz @m.deveaux @j.stroth
+/analysis/detectors/mvd/ @c.muentz @m.deveaux @j.stroth
+/macro/mvd/              @c.muentz @m.deveaux @j.stroth
+/sim/detectors/mvd/      @c.muentz @m.deveaux @j.stroth

CTestCustom.cmake

@@ -3,8 +3,13 @@
 message(" -- Read CTestCustom.cmake --")
 
 # Maximum size of uploaded test output of failed tests is 100kB
+# or 10MB in case of weekly tests
 # Larger output is cutted
-set(CTEST_CUSTOM_MAXIMUM_FAILED_TEST_OUTPUT_SIZE "102400")
+if(${CBM_TEST_MODEL} MATCHES Weekly)
+  set(CTEST_CUSTOM_MAXIMUM_FAILED_TEST_OUTPUT_SIZE "10240000")
+else()
+  set(CTEST_CUSTOM_MAXIMUM_FAILED_TEST_OUTPUT_SIZE "102400")
+endif()
 
 # Maximum size of uploaded test output of passed tests is 1kB
 # Larger output is cutted
@@ -42,16 +47,27 @@ set(CTEST_CUSTOM_WARNING_EXCEPTION
 
         # -- warnings from our external packages
         "external/flib_dpb"
-#        "external/flib_dpb_20"
         "external/ipc" 
+        "maybe_unused"
+        "include/AnalysisTree"
 
         # -- remove intended fall through warnings
+        "[[fallthrough]]"
+        "CbmMcbm2018UnpackerAlgoTof.cxx.*warning: attributes at the beginning of statement are ignored" 
         "CbmMcbm2018UnpackerAlgoTof.cxx.*warning: this statement may fall through"
         "CbmMcbm2018UnpackerAlgoTof.cxx.*note: here"
+        "CbmDeviceUnpackTofMcbm2018.cxx.*warning: attributes at the beginning of statement are ignored"
         "CbmDeviceUnpackTofMcbm2018.cxx.*warning: this statement may fall through"
         "CbmDeviceUnpackTofMcbm2018.cxx.*note: here"
-        "PairAnalysisHistos.cxx.*warning: this statement may fall through"
-        "PairAnalysisHistos.cxx.*note: here"
+        "CbmMcbm2018TofPar.cxx.*warning: attributes at the beginning of statement are ignored"
+        "CbmMcbm2018TofPar.cxx.*warning: this statement may fall through"
+        "CbmMcbm2018TofPar.cxx.*note: here"
+
+        # -- warnings from a feature we want and which is okay
+        "CbmCheckEvents.cxx:86:52"
+
+        # -- warnings about to long function for debugging
+        "variable tracking size limit exceeded"
 
         # -- warnings from structures for HADAQ memory casting
         "struct hadaq::HadTu"
@@ -62,11 +78,16 @@ set(CTEST_CUSTOM_WARNING_EXCEPTION
         # -- warnings from structures for MBS/LMD memory casting
         "struct mbs::Header"
 
-        # -- warnings from my test machine demac006
-        "warning: text-based stub file"
+        # -- warnings from macosx test machines
+        "ld: warning: dylib.*was built for newer macOS version.*than being linked"
+        ".*\\^.*"
+        "warning.*generated."
 
         # -- don't show pragma message warnings
         "Compiling CBM Configuration"
+
+        # -- filter warnings about unused attributes
+        "attribute directive ignored"
   )
 
 # -----------------------------------------------------------
@@ -81,6 +102,7 @@ Set (CTEST_CUSTOM_COVERAGE_EXCLUDE
      ".*Dict.cxx"
      ".*Fair.*"
      ".*GTest.*"
+     ".*external/.*"
     )
 
 Set(CTEST_CUSTOM_ERROR_EXCEPTION

CbmRoot_test.cmake

+# Check if cmake has the required version
+# Since flesnet requires 3.14.0 we should be consistent while we
+# build it in the CbmRoot context
+cmake_minimum_required(VERSION 3.14.0 FATAL_ERROR)
+cmake_policy(VERSION 3.14...3.23)
+
 Set(CTEST_SOURCE_DIRECTORY $ENV{SOURCEDIR})
 Set(CTEST_BINARY_DIRECTORY $ENV{BUILDDIR})
 Set(CTEST_SITE $ENV{SITE})
@@ -5,6 +11,14 @@ Set(CTEST_BUILD_NAME $ENV{LABEL})
 Set(CTEST_CMAKE_GENERATOR "Unix Makefiles")
 Set(CTEST_PROJECT_NAME "CBMROOT")
 Set(EXTRA_FLAGS $ENV{EXTRA_FLAGS})
+Set(INSTALL_PROJECT $ENV{INSTALL_PROJECT})
+
+if(NOT CBM_TEST_MODEL)
+  set(CBM_TEST_MODEL NIGHTLY)
+endif()
+
+include(${CTEST_SOURCE_DIRECTORY}/CTestConfig.cmake)
+Ctest_Read_Custom_Files("${CTEST_SOURCE_DIRECTORY}")
 
 Set(CTEST_UPDATE_COMMAND "git")
 
@@ -14,31 +28,37 @@ Set(CTEST_BUILD_COMMAND "${BUILD_COMMAND} -i -k -j$ENV{number_of_processors}")
 # Extract the FairRoot version from fairroot-config
 # The version info is of the form Major.Minor.Patch e.g. 15.11.1 and
 # is stored in the variable FairRoot_VERSION
-Set(CMAKE_MODULE_PATH "${CTEST_SOURCE_DIRECTORY}/cmake/modules" ${CMAKE_MODULE_PATH})
-Include(CbmMacros)
-FairRootVersion()
-
-If(${FairRoot_VERSION} VERSION_LESS 16.0.0)
-  Set(CTEST_USE_LAUNCHERS 0)
+#Set(CMAKE_MODULE_PATH "${CTEST_SOURCE_DIRECTORY}/cmake/modules" ${CMAKE_MODULE_PATH})
+#set(FAIRROOTPATH $ENV{FAIRROOTPATH})
+#Include(CbmMacros)
+#FairRootVersion()
+
+message("Compiling with $ENV{number_of_processors} jobs in parallel.")
+message("Testing with $ENV{number_of_processors_for_test} jobs in parallel.")
+
+Set(CTEST_USE_LAUNCHERS 1)
+
+If(${CBM_TEST_MODEL} MATCHES MergeRequest OR ${CBM_TEST_MODEL} MATCHES Continuous)
+  Set(_BuildType NIGHTLY)
+  Set(_CMakeModel Continuous)
+elseIf(${CBM_TEST_MODEL} MATCHES Weekly OR ${CBM_TEST_MODEL} MATCHES Profile)
+  Set(_BuildType PROFILE)
+  Set(_CMakeModel Nightly)
 Else()
-  Set(CTEST_USE_LAUNCHERS 1)
+  String(TOUPPER ${CBM_TEST_MODEL} _BuildType)
+  set(_CMakeModel ${CBM_TEST_MODEL})
 EndIf()
 
-If($ENV{ctest_model} MATCHES Weekly)
-  Set(_Model PROFILE)
-ElseIf($ENV{ctest_model} MATCHES MergeRequest)
-  Set(_Model CONTINUOUS)
+If(EXTRA_FLAGS AND INSTALL_PROJECT)
+  Set(CTEST_CONFIGURE_COMMAND " \"${CMAKE_EXECUTABLE_NAME}\" \"-G${CTEST_CMAKE_GENERATOR}\" \"-DCBM_TEST_MODEL=${CBM_TEST_MODEL}\" \"-DCMAKE_BUILD_TYPE=${_BuildType}\" \"-DCTEST_USE_LAUNCHERS=${CTEST_USE_LAUNCHERS}\" \"${EXTRA_FLAGS}\" \"-DCMAKE_INSTALL_PREFIX=${CTEST_SOURCE_DIRECTORY}/install\" \"${CTEST_SOURCE_DIRECTORY}\" ")
+ElseIf(EXTRA_FLAGS)
+  Set(CTEST_CONFIGURE_COMMAND " \"${CMAKE_EXECUTABLE_NAME}\" \"-G${CTEST_CMAKE_GENERATOR}\" \"-DCBM_TEST_MODEL=${CBM_TEST_MODEL}\" \"-DCMAKE_BUILD_TYPE=${_BuildType}\" \"-DCTEST_USE_LAUNCHERS=${CTEST_USE_LAUNCHERS}\" \"${EXTRA_FLAGS}\" \"${CTEST_SOURCE_DIRECTORY}\" ")
 Else()
-  String(TOUPPER $ENV{ctest_model} _Model)
+  Set(CTEST_CONFIGURE_COMMAND " \"${CMAKE_EXECUTABLE_NAME}\" \"-G${CTEST_CMAKE_GENERATOR}\" \"-DCBM_TEST_MODEL=${CBM_TEST_MODEL}\" \"-DCMAKE_BUILD_TYPE=${_BuildType}\" \"-DCTEST_USE_LAUNCHERS=${CTEST_USE_LAUNCHERS}\" \"${CTEST_SOURCE_DIRECTORY}\" ")
 EndIf()
 
-If(EXTRA_FLAGS)
-  Set(CTEST_CONFIGURE_COMMAND " \"${CMAKE_EXECUTABLE_NAME}\" \"-G${CTEST_CMAKE_GENERATOR}\" \"-DCMAKE_BUILD_TYPE=${_Model}\" \"-DCTEST_USE_LAUNCHERS=${CTEST_USE_LAUNCHERS}\" \"${EXTRA_FLAGS}\" \"${CTEST_SOURCE_DIRECTORY}\" ")
-Else()
-  Set(CTEST_CONFIGURE_COMMAND " \"${CMAKE_EXECUTABLE_NAME}\" \"-G${CTEST_CMAKE_GENERATOR}\" \"-DCMAKE_BUILD_TYPE=${_Model}\" \"-DCTEST_USE_LAUNCHERS=${CTEST_USE_LAUNCHERS}\" \"${CTEST_SOURCE_DIRECTORY}\" ")
-EndIf()
-
-If($ENV{ctest_model} MATCHES Nightly OR $ENV{ctest_model} MATCHES Weekly OR $ENV{ctest_model} MATCHES Profile)
+#If(${CBM_TEST_MODEL} MATCHES Nightly OR ${CBM_TEST_MODEL} MATCHES Weekly OR ${CBM_TEST_MODEL} MATCHES Profile)
+If(NOT ${_BuildType} MATCHES EXPERIMENTAL)
 
   Find_Program(GCOV_COMMAND gcov)
   If(GCOV_COMMAND)
@@ -46,91 +66,161 @@ If($ENV{ctest_model} MATCHES Nightly OR $ENV{ctest_model} MATCHES Weekly OR $ENV
     Set(CTEST_COVERAGE_COMMAND ${GCOV_COMMAND})
   EndIf(GCOV_COMMAND)
 
-  If(NOT $ENV{ctest_model} MATCHES Weekly)
-    Set(ENV{ctest_model} Nightly)
-  EndIf()
-
-  # get the information about conflicting or localy modified files
-  # from svn, extract the relavant information about the file name
-  # and put the result in the output variable
-  If(EXISTS ${CTEST_SOURCE_DIRECTORY}/.svn)
-    Execute_Process(COMMAND svn stat -u  
-                    COMMAND grep ^[CM]
-                    COMMAND cut -c21- 
-                    OUTPUT_VARIABLE FILELIST
-                    )
-
-    # create out of the output a cmake list. This step is done to convert the
-    # stream into seperated filenames.
-    # The trick is to exchange an "\n" by an ";" which is the separartor in
-    # a list created by cmake 
-    String(REGEX REPLACE "\n" ";" _result "${FILELIST}")
-
-    ForEach(_file ${_result})
-      String(STRIP "${_file}" _file1)
-      Set(CTEST_NOTES_FILES ${CTEST_NOTES_FILES} "${CTEST_SOURCE_DIRECTORY}/${_file1}")
-    EndForEach(_file ${_result})
-  EndIf()
-
   CTEST_EMPTY_BINARY_DIRECTORY(${CTEST_BINARY_DIRECTORY})
 
 EndIf()
 
-Configure_File(${CTEST_SOURCE_DIRECTORY}/CTestCustom.cmake
-               ${CTEST_BINARY_DIRECTORY}/CTestCustom.cmake
-              )
-Ctest_Read_Custom_Files("${CTEST_BINARY_DIRECTORY}")
+Ctest_Start(${_CMakeModel})
 
-If($ENV{ctest_model} MATCHES MergeRequest)
-  set(ENV{ctest_model} Continuous)
+unset(repeat)
+if(${_CMakeModel} MATCHES Continuous)
+  if(CMAKE_VERSION VERSION_GREATER_EQUAL 3.17)
+    set(repeat REPEAT UNTIL_PASS:2)
+  endif()
 EndIf()
 
-Ctest_Start($ENV{ctest_model})
-
-If($ENV{ctest_model} MATCHES Continuous)
-  set(ENV{ctest_model} Nightly)
+# The stop time should be a date compatible string without day nor timezone
+# Examples:
+# => CTEST_END_TIME_LIMIT=`date -d "${END_TIME}CET -5minutes" +"%H:%M:%S"`
+# => CTEST_END_TIME_LIMIT=`date -d "now +25minutes" +"%H:%M:%S"`
+unset(stop_time)
+If(DEFINED ENV{CTEST_END_TIME_LIMIT})
+  set(stop_time STOP_TIME "$ENV{CTEST_END_TIME_LIMIT}")
+  message(STATUS " End time for the ctest test runs set to ${stop_time}")
 EndIf()
 
-
-If(NOT $ENV{ctest_model} MATCHES Experimental)
+If(NOT ${_BuildType} MATCHES EXPERIMENTAL)
   Ctest_Update(SOURCE "${CTEST_SOURCE_DIRECTORY}")
 EndIf()
 
 Ctest_Configure(BUILD "${CTEST_BINARY_DIRECTORY}"
                 RETURN_VALUE _RETVAL
 )
+
 If(NOT _RETVAL)
-  Ctest_Build(BUILD "${CTEST_BINARY_DIRECTORY}")
-  If($ENV{ctest_model} MATCHES Continuous)
-    CTest_Submit(PARTS Update Configure Build)
+  Ctest_Build(BUILD "${CTEST_BINARY_DIRECTORY}"
+              NUMBER_ERRORS _NUM_ERROR
+             )
+
+  If(${_CMakeModel} MATCHES Continuous)
+    CTest_Submit(PARTS Update Configure Build
+                 BUILD_ID cdash_build_id
+                )
+    if(${_NUM_ERROR} GREATER 0)
+      message(STATUS " ")
+      message(STATUS " You can find the produced results on the CDash server")
+      message(STATUS " ")
+      message(STATUS " CDash Build Summary ..: "
+              "${CTEST_DROP_METHOD}://${CTEST_DROP_SITE}/buildSummary.php?buildid=${cdash_build_id}"
+             )
+      message(STATUS " CDash Test List ......: "
+              "${CTEST_DROP_METHOD}://${CTEST_DROP_SITE}/viewTest.php?buildid=${cdash_build_id}"
+             )
+      message(STATUS " ")
+      Message(STATUS "Build finished with ${_NUM_ERROR} errors")
+      message(FATAL_ERROR "Compilation failure")
+    endif()
   EndIf()
 
-  Ctest_Test(BUILD "${CTEST_BINARY_DIRECTORY}" 
-             PARALLEL_LEVEL $ENV{number_of_processors}
+  If(DEFINED ENV{CI_TEST_STAGE_TOTAL_TIME_LIMIT})
+    # Compute test stage timeout based on current time + limit from environment variable
+    If(DEFINED ENV{CTEST_END_TIME_LIMIT})
+      # If also full DASH run timeout defined, also compare the two and keep the earliest one
+      execute_process (
+        COMMAND scripts/find_citests_ctest_stop_time.sh $ENV{CTEST_END_TIME_LIMIT}
+        OUTPUT_VARIABLE CI_TESTS_TOTAL_END_TIME_DATE
+      )
+    Else()
+      # Else just get the CI jpb timeout
+      execute_process (
+        COMMAND scripts/find_citests_ctest_stop_time.sh
+        OUTPUT_VARIABLE CI_TESTS_TOTAL_END_TIME_DATE
+      )
+    EndIf()
+    set(stop_time STOP_TIME "${CI_TESTS_TOTAL_END_TIME_DATE}")
+    message(STATUS "Due to CI mode, Set end time for the ctest test runs to ${stop_time}")
+  EndIf()
+
+  Ctest_Test(BUILD "${CTEST_BINARY_DIRECTORY}"
+             PARALLEL_LEVEL $ENV{number_of_processors_for_test}
+             ${repeat}
+             ${stop_time}
              RETURN_VALUE _ctest_test_ret_val
             )
 
-  If($ENV{ctest_model} MATCHES Continuous)
-    CTest_Submit(PARTS Test)
+  If(${_CMakeModel} MATCHES Continuous)
+    CTest_Submit(PARTS Test
+                 BUILD_ID cdash_build_id
+                )
   EndIf()
 
   If(GCOV_COMMAND)
     Ctest_Coverage(BUILD "${CTEST_BINARY_DIRECTORY}")
-    If($ENV{ctest_model} MATCHES Continuous)
-      CTest_Submit(PARTS Coverage)
+    If(${_CMakeModel} MATCHES Continuous)
+      CTest_Submit(PARTS Coverage
+                   BUILD_ID cdash_build_id
+                  )
     EndIf()
   EndIf()
 
   Ctest_Upload(FILES ${CTEST_NOTES_FILES})
-  If(NOT $ENV{ctest_model} MATCHES Continuous)
-    Ctest_Submit()
+  If(NOT ${_CMakeModel} MATCHES Continuous)
+    Ctest_Submit(BUILD_ID cdash_build_id)
+  EndIf()
+
+  If(EXTRA_FLAGS MATCHES "CBM_TEST_INSTALL" AND NOT _ctest_test_ret_val)
+#  If(EXTRA_FLAGS MATCHES "INSTALL_PREFIX" AND EXTRA_FLAGS MATCHES "CBM_TEST_INSTALL" AND NOT _ctest_test_ret_val)
+    Message("Testing Installation")
+    execute_process(COMMAND ${BUILD_COMMAND} install -j$ENV{number_of_processors} WORKING_DIRECTORY ${CTEST_BINARY_DIRECTORY}
+                    RESULTS_VARIABLE _install_ret_value
+                   )
+    if (NOT _install_ret_value)
+      message("executing test suite in ${CTEST_BINARY_DIRECTORY}/install with source folder available")
+      execute_process(COMMAND ${CTEST_SOURCE_DIRECTORY}/cmake/scripts/execute_installation_test.sh ${CTEST_SOURCE_DIRECTORY}/install
+                      RESULTS_VARIABLE _install_ret_value
+                     )
+      execute_process(COMMAND ${CMAKE_EXECUTABLE_NAME} -E rm -R build MQ algo analysis core external fles reco sim
+                      WORKING_DIRECTORY ${CTEST_SOURCE_DIRECTORY}
+                     )
+      message("executing test suite in ${CTEST_BINARY_DIRECTORY}/install wihout source folder available")
+      execute_process(COMMAND ${CTEST_SOURCE_DIRECTORY}/cmake/scripts/execute_installation_test.sh ${CTEST_SOURCE_DIRECTORY}/install
+                      RESULTS_VARIABLE _install_ret_value
+                     )
+    endif()
+  Else()
+     # if installation isn't tested the return value should be 0
+     set(_install_ret_value false)
   EndIf()
 
+  Message("_ctest_test_ret_val: ${_ctest_test_ret_val}")
+  Message("_install_ret_value: ${_install_ret_value}")
+
   # Pipeline should fail also in case of failed tests
-  if (_ctest_test_ret_val)
+  if (_ctest_test_ret_val OR _install_ret_value)
+    message(STATUS " ")
+    message(STATUS " You can find the produced results on the CDash server")
+    message(STATUS " ")
+    message(STATUS " CDash Build Summary ..: "
+            "${CTEST_DROP_METHOD}://${CTEST_DROP_SITE}/buildSummary.php?buildid=${cdash_build_id}"
+           )
+    message(STATUS " CDash Test List ......: "
+            "${CTEST_DROP_METHOD}://${CTEST_DROP_SITE}/viewTest.php?buildid=${cdash_build_id}"
+           )
+    message(STATUS " ")
     Message(FATAL_ERROR "Some tests failed.")
   endif()
 
 Else()
-  CTest_Submit()
+  CTest_Submit(BUILD_ID cdash_build_id)
 EndIf()
+
+message(STATUS " ")
+message(STATUS " You can find the produced results on the CDash server")
+message(STATUS " ")
+message(STATUS " CDash Build Summary ..: "
+        "${CTEST_DROP_METHOD}://${CTEST_DROP_SITE}/buildSummary.php?buildid=${cdash_build_id}"
+       )
+message(STATUS " CDash Test List ......: "
+        "${CTEST_DROP_METHOD}://${CTEST_DROP_SITE}/viewTest.php?buildid=${cdash_build_id}"
+       )
+message(STATUS " ")

Dart.sh

 #!/bin/bash
+# Copyright (C) 2007 GSI Helmholtzzentrum fuer Schwerionenforschung, Darmstadt
+# SPDX-License-Identifier: GPL-3.0-only
+# First commited by Florian Uhlig
+
 
 function print_example(){
 echo "##################################################################"
@@ -61,7 +65,8 @@ else
 fi
 
 # set the ctest model to command line parameter
-export ctest_model=$1
+#export ctest_model=$1
+ctest_model=$1
 
 # test for architecture
 arch=$(uname -s | tr '[A-Z]' '[a-z]')
@@ -114,14 +119,22 @@ then
   fi
 fi
 
+if [ -z $NCPU4TEST ]; then
+  export number_of_processors_for_test=$number_of_processors
+else
+  export number_of_processors_for_test=$NCPU4TEST
+fi
+
 echo "************************"
 date
 echo "LABEL: " $LABEL
 echo "SITE: " $SITE
 echo "Model: " ${ctest_model}
-echo "Nr. of processes: " $number_of_processors
+echo "Nr. of processes for build: " $number_of_processors
+echo "Nr. of processes for test: " $number_of_processors_for_test
 echo "************************"
 
 cd $SOURCEDIR
 
-ctest -S $SOURCEDIR/CbmRoot_test.cmake -V --VV 
+ctest -S $SOURCEDIR/CbmRoot_test.cmake -V -DCBM_TEST_MODEL=${ctest_model}
+#ctest -S $SOURCEDIR/CbmRoot_test.cmake -V --VV

INSTALL

-Installation Instructionsfor for CbmRoot 
-*****************************************
-
-1. Dependencies
-
-1.1 Compiler
-
-To be able to compile CbmRoot a compiler with full C++11 support is needed. 
-GCC since version 4.8 and clang since version 3.4 are known to work without
-problems. 
-
-1.2 FairSoft
-
-To install, compile, and run CbmRoot several external programs are required. 
-This are for example Root, Geant3 or Geant4. The complete list can be found 
-on the FairRoot webpage (fairroot.gsi.de). Since most of these programs can't 
-be installed using the package manager of the used Linux distribution, or at 
-least can't be installed in the required version, the FairRoot team provides 
-a GIT repository with all needed packages and some scripts to automatically 
-build and install these so called external packages.
-
-Detailed instructions how to get and compile FairSoft (aka external packages) 
-can be found at the following webpage
-
-  https://redmine.cbm.gsi.de/projects/cbmroot/wiki/Install_External_Packages
-
-If you are working at GSI there are always ready-to-use versions available. 
-For detailed information please check the following wiki page
-
-  https://redmine.cbm.gsi.de/projects/cbmroot/wiki/RunCbmGSI
-
-1.3 FairRoot
-
-CbmRoot is based on FairRoot, a package which meanwhile serves several
-experiments as base for their developments. Beside FairSoft you need also
-to install FairRoot to be able to compile CbmRoot 
-
-Detailed instructions how to get and compile FairRoot can be found at the 
-following webpage
-
-  https://redmine.cbm.gsi.de/projects/cbmroot/wiki/InstallFairRoot
-
-2. Recommended versions
-
-GCC  : >= 4.8
-  or
-Clang: >= 3.4
-
-FairSoft: may16p1
-
-FairRoot: v-16.06b
-
-
-3. Automatic installation
-
-To make the installation more easy we provide a script which automatically
-gets and installs FairSoft, FairRoot, and CbmRoot in one go. The script
-always take the correct FairSoft and FairRoot versions. 
-The full description of this process is at 
-
-  https://redmine.cbm.gsi.de/projects/cbmroot/wiki/InstallCbmRootAuto
-
-The one line command which has to be executed inside the CbmRoot source
-directory is
-
-  ./autoinstall_framework.sh 1 1 1
-

LICENSE

+                   GNU GENERAL PUBLIC LICENSE
+                       Version 3, 29 June 2007
+
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MQ/CMakeLists.txt

-If(FairSoft_VERSION VERSION_LESS 18.6.0)
-  Add_Definitions(-DHAVE_FAIRMQSTATEMACHINE)
-EndIf()
+Set(FAIRMQ_LIBS FairMQStateMachine FairMQ)
+
+# RPATH information should be present for executables in the build as well
+# as in the installation directory
+
+# use, i.e. don't skip the full RPATH for the build tree
+set(CMAKE_SKIP_BUILD_RPATH FALSE)
+
+# when building, don't use the install RPATH already
+# (but later on when installing)
+set(CMAKE_BUILD_WITH_INSTALL_RPATH FALSE)
+
+set(CMAKE_INSTALL_RPATH "${CMAKE_INSTALL_PREFIX}/lib")
+
+# add the automatically determined parts of the RPATH
+# which point to directories outside the build tree to the install RPATH
+set(CMAKE_INSTALL_RPATH_USE_LINK_PATH TRUE)
+
+
 
 add_subdirectory(base)
 add_subdirectory(source)
 add_subdirectory(sink)
-#add_subdirectory(unpacker)
+add_subdirectory(unpacker)
 
 add_subdirectory(monitor)
 add_subdirectory(histoServer)
@@ -15,9 +31,5 @@ add_subdirectory(mcbm)
 #add_subdirectory(sts)
 #add_subdirectory(test)
 
-# The following subdirectories contain files which do not compile with
-# FairRoot v18
-# Don't compile it for the time being
-# TODO: Fix the compilation problems
-  add_subdirectory(parmq)
-#  add_subdirectory(hitbuilder)
+add_subdirectory(parmq)
+add_subdirectory(hitbuilder)

MQ/base/CMakeLists.txt

 set(INCLUDE_DIRECTORIES
-    ${CMAKE_CURRENT_SOURCE_DIR}
-    ${CMAKE_SOURCE_DIR}/MQ/base
-)
-
-Set(SYSTEM_INCLUDE_DIRECTORIES
-    ${SYSTEM_INCLUDE_DIRECTORIES}
-    ${FAIRMQ_INCLUDE_DIR}
-)
-
-include_directories(${INCLUDE_DIRECTORIES})
-include_directories(SYSTEM ${SYSTEM_INCLUDE_DIRECTORIES})
-
-set(LINK_DIRECTORIES
-  ${FAIRMQ_LIBRARY_DIR}
-)
-
-link_directories(${LINK_DIRECTORIES})
-
-set(FAIR_LIBS
-  FairMQ
-)
-
-If(FAIRLOGGER_FOUND)
-  set(FAIR_LIBS
-      ${FAIR_LIBS}
-      FairLogger
-     )
-EndIf()
+  ${CMAKE_CURRENT_SOURCE_DIR}
+  )
 
 set(SRCS
   CbmMQChannels.cxx
-)
+  )
+
+set(LIBRARY_NAME CbmMQBase)
+set(PUBLIC_DEPENDENCIES
+  FairMQ::FairMQ
+  )
 
-Set(LIBRARY_NAME CbmMQBase)
-Set(DEPENDENCIES
-    ${FAIR_LIBS}
-)
+set(INTERFACE_DEPENDENCIES
+  ROOT::Net
+  )
 
-GENERATE_LIBRARY()
+generate_cbm_library()