From 71ad1331bf3ff91db3d80e932399ba4ac866533a Mon Sep 17 00:00:00 2001
From: Ralf Kliemt <r.kliemt@gsi.de>
Date: Wed, 17 Jul 2024 07:18:02 +0000
Subject: [PATCH] Jupyter kernelspec files
Add generation of Jupyter kernelspec files to support Root & CbmRoot classes in Python3.
Generation is performed by cmake and the files are placed at <build/install>/share/jupyter/.
Some documentation is provided in docs/jupyter.
---
CMakeLists.txt | 5 +
cmake/modules/CbmGenerateConfig.cmake | 72 +-
cmake/modules/WriteGeant4Data_jupy.cmake | 6 +
cmake/modules/WriteKernelFile.cmake | 199 +++++
.../scripts/jupyter/CbmRootPy/kernel.json.in | 39 +
cmake/scripts/jupyter/logo-64x64.png | Bin 0 -> 6361 bytes
docs/jupyter/Jupyter.rst | 42 +
docs/jupyter/notebooks/CbmRoot.ipynb | 797 ++++++++++++++++++
8 files changed, 1124 insertions(+), 36 deletions(-)
create mode 100644 cmake/modules/WriteGeant4Data_jupy.cmake
create mode 100644 cmake/modules/WriteKernelFile.cmake
create mode 100644 cmake/scripts/jupyter/CbmRootPy/kernel.json.in
create mode 100644 cmake/scripts/jupyter/logo-64x64.png
create mode 100644 docs/jupyter/Jupyter.rst
create mode 100644 docs/jupyter/notebooks/CbmRoot.ipynb
diff --git a/CMakeLists.txt b/CMakeLists.txt
index c67a306aab..cae01e8ee3 100644
--- a/CMakeLists.txt
+++ b/CMakeLists.txt
@@ -71,6 +71,8 @@ include(FairMacros)
include(WriteConfigFile)
include(CheckCompiler)
+include(WriteGeant4Data_jupy)
+include(WriteKernelFile)
# Do some basic checks
# out-of-source build, unix system and
@@ -82,6 +84,9 @@ list(PREPEND CMAKE_PREFIX_PATH ${SIMPATH})
unset(packages)
+find_package(Python3)
+MESSAGE("Python3_EXECUTABLE=${Python3_EXECUTABLE}")
+
#Searches for ROOT Package
find_package(ROOT 6.22 CONFIG REQUIRED)
if(ROOT_FOUND)
diff --git a/cmake/modules/CbmGenerateConfig.cmake b/cmake/modules/CbmGenerateConfig.cmake
index 73519f91a8..92716aaacb 100644
--- a/cmake/modules/CbmGenerateConfig.cmake
+++ b/cmake/modules/CbmGenerateConfig.cmake
@@ -1,38 +1,38 @@
macro(generate_config_files)
-
- # generate config files used for build directory
- WRITE_CONFIG_FILE(config.sh)
- WRITE_CONFIG_FILE(config.csh)
-
- # generate config files used for installation directory
- SET(ROOT_INCLUDE_PATH
- ${ROOT_INCLUDE_PATH}
- "${CMAKE_INSTALL_PREFIX}/include"
- "${CMAKE_INSTALL_PREFIX}/include/mvd"
- "${CMAKE_INSTALL_PREFIX}/include/littrack"
- "${CMAKE_INSTALL_PREFIX}/include/KF"
- "${CMAKE_INSTALL_PREFIX}/include/AnalysisTree"
- "${CMAKE_INSTALL_PREFIX}/include/AnalysisTreeQA"
- )
-
- set(CMAKE_INSTALL_LIBDIR lib)
- SET(VMCWORKDIR ${CMAKE_INSTALL_PREFIX}/share/cbmroot)
-
- WRITE_CONFIG_FILE(config.sh_install)
- WRITE_CONFIG_FILE(config.csh_install)
-
- Install(FILES ${CMAKE_BINARY_DIR}/config.sh_install
- DESTINATION bin
- RENAME CbmRootConfig.sh
- )
-
- Install(FILES ${CMAKE_BINARY_DIR}/check_system.sh
- DESTINATION bin
- )
-
- Install(FILES ${CMAKE_BINARY_DIR}/config.csh_install
- DESTINATION bin
- RENAME CbmRootConfig.csh
- )
-
+ # generate config files used for build directory
+ WRITE_CONFIG_FILE(config.sh)
+ WRITE_CONFIG_FILE(config.csh)
+ WRITE_KERNEL_FILE(CbmRootPy/kernel.json)
+
+ # generate config files used for installation directory
+ SET(ROOT_INCLUDE_PATH
+ ${ROOT_INCLUDE_PATH}
+ "${CMAKE_INSTALL_PREFIX}/include"
+ "${CMAKE_INSTALL_PREFIX}/include/mvd"
+ "${CMAKE_INSTALL_PREFIX}/include/littrack"
+ "${CMAKE_INSTALL_PREFIX}/include/KF"
+ "${CMAKE_INSTALL_PREFIX}/include/AnalysisTree"
+ "${CMAKE_INSTALL_PREFIX}/include/AnalysisTreeQA"
+ )
+
+ set(CMAKE_INSTALL_LIBDIR lib)
+ SET(VMCWORKDIR ${CMAKE_INSTALL_PREFIX}/share/cbmroot)
+
+ WRITE_CONFIG_FILE(config.sh_install)
+ WRITE_CONFIG_FILE(config.csh_install)
+ WRITE_KERNEL_FILE(CbmRootPy/kernel.json_install)
+
+ Install(FILES ${CMAKE_BINARY_DIR}/config.sh_install
+ DESTINATION bin
+ RENAME CbmRootConfig.sh
+ )
+
+ Install(FILES ${CMAKE_BINARY_DIR}/check_system.sh
+ DESTINATION bin
+ )
+
+ Install(FILES ${CMAKE_BINARY_DIR}/config.csh_install
+ DESTINATION bin
+ RENAME CbmRootConfig.csh
+ )
endmacro()
diff --git a/cmake/modules/WriteGeant4Data_jupy.cmake b/cmake/modules/WriteGeant4Data_jupy.cmake
new file mode 100644
index 0000000000..033d3d9fcb
--- /dev/null
+++ b/cmake/modules/WriteGeant4Data_jupy.cmake
@@ -0,0 +1,6 @@
+MACRO(Write_Geant4Data_Variables_jupy)
+Set(Geant4Data_Variables_jupy "")
+foreach(DATASET ${Geant4_DATASETS})
+ string(CONCAT Geant4Data_Variables_jupy ${Geant4Data_Variables_jupy} " \"${Geant4_DATASET_${DATASET}_ENVVAR}\": \"${Geant4_DATASET_${DATASET}_PATH}\",\n")
+endforeach()
+ENDMACRO()
diff --git a/cmake/modules/WriteKernelFile.cmake b/cmake/modules/WriteKernelFile.cmake
new file mode 100644
index 0000000000..89cef789b8
--- /dev/null
+++ b/cmake/modules/WriteKernelFile.cmake
@@ -0,0 +1,199 @@
+################################################################################
+ # Copyright (C) 2014 GSI Helmholtzzentrum fuer Schwerionenforschung GmbH #
+ # #
+ # This software is distributed under the terms of the #
+ # GNU Lesser General Public Licence (LGPL) version 3, #
+ # copied verbatim in the file "LICENSE" #
+ ################################################################################
+ MACRO (WRITE_KERNEL_FILE filename)
+
+ #MESSAGE("
+ # Python3_FOUND=${Python3_FOUND}
+ # Python3_Interpreter_FOUND=${Python3_Interpreter_FOUND}
+ # Python3_EXECUTABLE=${Python3_EXECUTABLE}
+ # "
+ #)
+
+ String(REGEX REPLACE "^.*(install).*$" "\\1" INSTALL_VERSION ${filename})
+ String(COMPARE EQUAL "install" "${INSTALL_VERSION}" INSTALL_TRUE)
+
+ List(REMOVE_ITEM LD_LIBRARY_PATH ${CMAKE_BINARY_DIR}/lib)
+
+ If (INSTALL_TRUE)
+ SET(_INSTALLDIR ${CMAKE_INSTALL_PREFIX})
+ SET(_BINDIR ${CMAKE_INSTALL_PREFIX}/bin)
+ #SET(VMCWORKDIR ${CMAKE_INSTALL_PREFIX}/share/fairbase)
+ SET(FAIRLIBDIR ${CMAKE_INSTALL_PREFIX}/${CMAKE_INSTALL_LIBDIR})
+ SET(_LD_LIBRARY_PATH ${FAIRLIBDIR} ${LD_LIBRARY_PATH})
+ Else (INSTALL_TRUE)
+ SET(_INSTALLDIR ${CMAKE_BINARY_DIR})
+ SET(_BINDIR ${CMAKE_BINARY_DIR})
+ #SET(VMCWORKDIR ${CMAKE_SOURCE_DIR})
+ SET(FAIRLIBDIR ${CMAKE_BINARY_DIR}/lib)
+ SET(_LD_LIBRARY_PATH ${FAIRLIBDIR} ${LD_LIBRARY_PATH})
+ EndIf (INSTALL_TRUE)
+
+ If(NOT DEFINED FULL_CONFIG_FILE)
+ Set(FULL_CONFIG_FILE "true")
+ EndIf(NOT DEFINED FULL_CONFIG_FILE)
+
+
+ IF(CMAKE_SYSTEM_NAME MATCHES Linux)
+ IF(FAIRROOTPATH)
+ configure_file(${FAIRROOTPATH}/share/fairbase/cmake/scripts/check_system.sh.in
+ ${CMAKE_CURRENT_BINARY_DIR}/check_system.sh
+ )
+ configure_file(${FAIRROOTPATH}/share/fairbase/cmake/scripts/check_system.csh.in
+ ${CMAKE_CURRENT_BINARY_DIR}/check_system.csh
+ )
+ ELSE(FAIRROOTPATH)
+ configure_file(${PROJECT_SOURCE_DIR}/cmake/scripts/check_system.sh.in
+ ${CMAKE_CURRENT_BINARY_DIR}/check_system.sh
+ )
+ configure_file(${PROJECT_SOURCE_DIR}/cmake/scripts/check_system.csh.in
+ ${CMAKE_CURRENT_BINARY_DIR}/check_system.csh
+ )
+ ENDIF(FAIRROOTPATH)
+
+ EXECUTE_PROCESS(COMMAND lsb_release -sd
+ OUTPUT_VARIABLE _linux_flavour
+ OUTPUT_STRIP_TRAILING_WHITESPACE
+ )
+
+ IF(_linux_flavour)
+ STRING(REGEX REPLACE "^\"" "" _linux_flavour ${_linux_flavour})
+ STRING(REGEX REPLACE "\"$" "" _linux_flavour ${_linux_flavour})
+ ENDIF(_linux_flavour)
+
+ EXECUTE_PROCESS(COMMAND uname -m
+ OUTPUT_VARIABLE _system
+ OUTPUT_STRIP_TRAILING_WHITESPACE
+ )
+
+ ElseIf(CMAKE_SYSTEM_NAME MATCHES Darwin)
+ IF(FAIRROOTPATH)
+ configure_file(${FAIRROOTPATH}/share/fairbase/cmake/scripts/check_system_mac.sh.in
+ ${CMAKE_CURRENT_BINARY_DIR}/check_system.sh
+ )
+ configure_file(${FAIRROOTPATH}/share/fairbase/cmake/scripts/check_system_mac.csh.in
+ ${CMAKE_CURRENT_BINARY_DIR}/check_system.csh
+ )
+ ELSE(FAIRROOTPATH)
+ configure_file(${PROJECT_SOURCE_DIR}/cmake/scripts/check_system_mac.sh.in
+ ${CMAKE_CURRENT_BINARY_DIR}/check_system.sh
+ )
+ configure_file(${PROJECT_SOURCE_DIR}/cmake/scripts/check_system_mac.csh.in
+ ${CMAKE_CURRENT_BINARY_DIR}/check_system.csh
+ )
+ ENDIF(FAIRROOTPATH)
+ EXECUTE_PROCESS(COMMAND uname -sr
+ OUTPUT_VARIABLE _linux_flavour
+ OUTPUT_STRIP_TRAILING_WHITESPACE
+ )
+ EXECUTE_PROCESS(COMMAND uname -m
+ OUTPUT_VARIABLE _system
+ OUTPUT_STRIP_TRAILING_WHITESPACE
+ )
+ ENDIF(CMAKE_SYSTEM_NAME MATCHES Linux)
+
+
+ CONVERT_LIST_TO_STRING(${Geant4_INCLUDE_DIRS})
+ Set(Geant4_INCLUDE_DIRS ${output})
+
+ CONVERT_LIST_TO_STRING(${Geant4VMC_INCLUDE_DIRS})
+ Set(Geant4VMC_INCLUDE_DIRS ${output})
+
+ #CONVERT_LIST_TO_STRING(${Geant4VMC_CMAKE_INSTALL_LIBDIR})
+ #Set(Geant4VMC_LIBRARY_DIR ${output})
+
+ CONVERT_LIST_TO_STRING(${Geant4VMC_MACRO_DIR})
+ Set(Geant4VMC_MACRO_DIR ${output})
+
+ Write_Geant4Data_Variables_jupy()
+
+ CONVERT_LIST_TO_STRING(${PYTHIA6_LIBRARY_DIR})
+ Set(PYTHIA6_LIBRARY_DIR ${output})
+
+ CONVERT_LIST_TO_STRING(${Geant3_SYSTEM_DIR})
+ Set(G3SYS ${output})
+
+ CONVERT_LIST_TO_STRING(${Geant3_INCLUDE_DIRS})
+ Set(Geant3_INCLUDE_DIRS ${output})
+
+ CONVERT_LIST_TO_STRING(${Geant3_LIBRARY_DIR})
+ Set(Geant3_LIBRARY_DIR ${output})
+
+ CONVERT_LIST_TO_STRING(${Geant3_LIBRARIES})
+ Set(Geant3_LIBRARIES ${output})
+
+ CONVERT_LIST_TO_STRING(${ROOT_LIBRARY_DIR})
+ Set(ROOT_LIBRARY_DIR ${output})
+
+ CONVERT_LIST_TO_STRING(${ROOT_LIBRARIES})
+ Set(ROOT_LIBRARIES ${output})
+
+ CONVERT_LIST_TO_STRING(${ROOT_INCLUDE_DIR})
+ Set(ROOT_INCLUDE_DIR ${output} )
+
+ #Set(VMCWORKDIR ${C})
+
+ Set(FAIRLIBDIR ${FAIRLIBDIR})
+
+ List(APPEND _LD_LIBRARY_PATH ${PYTHIA6_LIBRARY_DIR} ${Geant3_LIBRARY_DIR} ${Geant4VMC_LIBRARY_DIR})
+
+ List(REMOVE_DUPLICATES _LD_LIBRARY_PATH)
+ CONVERT_LIST_TO_STRING(${_LD_LIBRARY_PATH})
+
+ IF(CMAKE_SYSTEM_NAME MATCHES Linux)
+ Set(MY_LD_LIBRARY_PATH ${output})
+ ELSE(CMAKE_SYSTEM_NAME MATCHES Linux)
+ IF(CMAKE_SYSTEM_NAME MATCHES Darwin)
+ Set(MY_DYLD_LIBRARY_PATH ${output})
+ ENDIF(CMAKE_SYSTEM_NAME MATCHES Darwin)
+ ENDIF(CMAKE_SYSTEM_NAME MATCHES Linux)
+
+ Set(USE_VGM 1)
+
+ SET(PYTHONPATH ${CMAKE_SOURCE_DIR}/python ${FAIRLIBDIR} ${SIMPATH}/lib ${SIMPATH}/lib/root ${SIMPATH}/lib/Geant4 ${SIMPATH}/lib/g4py ${PYTHONPATH})
+ UNIQUE(PYTHONPATH "${PYTHONPATH}")
+ CONVERT_LIST_TO_STRING(${PYTHONPATH})
+ SET(MY_PYTHONPATH ${output})
+
+ SET (PATH ${ROOTSYS}/bin ${PATH})
+ UNIQUE(PATH "${PATH}")
+ CONVERT_LIST_TO_STRING(${PATH})
+ Set(MY_PATH ${output})
+
+ # If(FAIRSOFT_EXTERN)
+ # Set(PYTHIA8DATA "${SIMPATH}/share/pythia8/xmldoc")
+ # Else(FAIRSOFT_EXTERN)
+ # Set(PYTHIA8DATA "${SIMPATH}/generators/pythia8/xmldoc")
+ # EndIf(FAIRSOFT_EXTERN)
+
+ CONVERT_LIST_TO_STRING(${ROOT_INCLUDE_PATH})
+ Set(ROOT_INCLUDE_PATH ${output})
+
+ IF(${filename} MATCHES "[.]json.*$")
+ MESSAGE("Configuring Jupyter kernelspec file ${filename}")
+ String(REPLACE "_install" "" KERNELFILE ${filename})
+ configure_file(${CMAKE_SOURCE_DIR}/cmake/scripts/jupyter/${KERNELFILE}.in
+ ${CMAKE_CURRENT_BINARY_DIR}/share/jupyter/kernels/${filename}
+ )
+ get_filename_component(KERNELSUBPATH ${KERNELFILE} DIRECTORY)
+ file(COPY ${CMAKE_SOURCE_DIR}/cmake/scripts/jupyter/logo-64x64.png
+ DESTINATION share/jupyter/kernels/${KERNELSUBPATH}
+ )
+
+ IF(${filename} MATCHES "install$")
+ install( FILES ${CMAKE_BINARY_DIR}/share/jupyter/kernels/${filename}
+ DESTINATION share/jupyter/kernels
+ RENAME ${KERNELFILE}
+ )
+ install( FILES ${CMAKE_SOURCE_DIR}/cmake/scripts/jupyter/logo-64x64.png
+ DESTINATION share/jupyter/kernels/${KERNELSUBPATH}
+ )
+ ENDIF(${filename} MATCHES "install$")
+
+ ENDIF(${filename} MATCHES "[.]json.*$")
+
+ENDMACRO (WRITE_KERNEL_FILE)
diff --git a/cmake/scripts/jupyter/CbmRootPy/kernel.json.in b/cmake/scripts/jupyter/CbmRootPy/kernel.json.in
new file mode 100644
index 0000000000..0398990c58
--- /dev/null
+++ b/cmake/scripts/jupyter/CbmRootPy/kernel.json.in
@@ -0,0 +1,39 @@
+{
+ "language": "python",
+ "display_name": "CbmRoot Python3",
+ "argv": [
+ "@Python3_EXECUTABLE@",
+ "-m",
+ "ipykernel_launcher",
+ "-f",
+ "{connection_file}"
+ ],
+ "env": {
+ "Linux_Flavour_": "@_linux_flavour@",
+ "System_": "@_system@",
+ "SIMPATH": "@SIMPATH@",
+ "ROOTSYS": "@ROOTSYS@",
+ "FAIRROOTPATH": "@FAIRROOTPATH@",
+ "Geant4_INCLUDE_DIRS": "@Geant4_INCLUDE_DIRS@",
+ "Geant4VMC_INCLUDE_DIRS": "@Geant4VMC_INCLUDE_DIRS@",
+ "Geant4VMC_LIBRARY_DIR": "@Geant4VMC_LIBRARY_DIR@",
+ "Geant4VMC_MACRO_DIR": "@Geant4VMC_MACRO_DIR@",
+ "PYTHIA6_LIBRARY_DIR": "@PYTHIA6_LIBRARY_DIR@",
+ "Geant3_INCLUDE_DIRS": "@Geant3_INCLUDE_DIRS@",
+ "G3SYS": "@G3SYS@",
+ "Geant3_LIBRARY_DIR": "@Geant3_LIBRARY_DIR@",
+ "USE_VGM": "1",
+ "PYTHIA8DATA": "@PYTHIA8DATA@",
+@Geant4Data_Variables_jupy@
+ "ROOT_LIBRARY_DIR": "@ROOT_LIBRARY_DIR@",
+ "ROOT_LIBRARIES": "@ROOT_LIBRARIES@",
+ "ROOT_INCLUDE_DIR": "@ROOT_INCLUDE_DIR@",
+ "ROOT_INCLUDE_PATH": "@Geant3_INCLUDE_DIRS@:@ROOT_INCLUDE_PATH@",
+ "VMCWORKDIR": "@VMCWORKDIR@",
+ "FAIRLIBDIR": "@FAIRLIBDIR@",
+ "PYTHONPATH": "@MY_PYTHONPATH@",
+ "DYLD_LIBRARY_PATH": "@MY_DYLD_LIBRARY_PATH@:$DYLD_LIBRARY_PATH",
+ "LD_LIBRARY_PATH": "@MY_LD_LIBRARY_PATH@:$LD_LIBRARY_PATH",
+ "PATH": "@MY_PATH@:$PATH"
+ }
+}
diff --git a/cmake/scripts/jupyter/logo-64x64.png b/cmake/scripts/jupyter/logo-64x64.png
new file mode 100644
index 0000000000000000000000000000000000000000..81177c9aeaff3afbbcc91c098703ef56adb9a0d3
GIT binary patch
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diff --git a/docs/jupyter/Jupyter.rst b/docs/jupyter/Jupyter.rst
new file mode 100644
index 0000000000..cd5e045e76
--- /dev/null
+++ b/docs/jupyter/Jupyter.rst
@@ -0,0 +1,42 @@
+Jupyter Notebooks
+=================
+
+Jupyter Notebooks offer a large quality of life and are becoming more important with machine learning etc. Natively PandaRoot is a collection of C++ libraries which usually are collected and called through ROOT, mostly by macros.
+
+ROOT by itself features python bindings as well as an own C++ Kernel. With the ``%%cpp`` magic it is also possible to mix C++ code into python code. See the introduction to PyROOT_.
+
+.. _PyROOT: https://root.cern.ch/notebooks/HowTos/HowTo_ROOT-Notebooks.html
+
+Using the Kernels without installation
+######################################
+
+It it is enough to do the following::
+
+ source <build>/config.sh -p
+ export JUPYTER_CONFIG_DIR=$SIMPATH/etc/root/notebook
+ export JUPYTER_PATH=$SIMPATH/etc/root/notebook
+ jupyter notebook
+
+You now can use ROOT and CbmRoot classes in the Python3 kernel or the RootC++ kernel. Here are two example notebooks to start off with.
+
+Examples
+########
+
+- <source>/docs/jupyter/notebooks/CbmRoot.ipynb
+
+Install the Kernel
+##################
+
+In some cases it is beneficial to install the Kernel to automatically be used in the system. A simple 'jupyter notebook' command in a fresh shell would allow them to be used. Also VSCode with the jupyter extension would be able to spawn such notebooks inside the integrated environment.
+
+The downside is that the Kernels are pointing to one specific installation of CbmRoot and its dependencies and managing multiple installations may become cumbersome.
+
+As a prerequisit one has to install the metakernel package in python (``pip3 install metakernel``).
+To install the Kernels simply copy the folders from ``<build>/jupyter/kernels`` to the appropriate place:
+
+- ``~/.local/share/jupyter/kernels`` (Linux)
+- ``~/Library/Jupyter/kernels`` (Mac)
+- ``%APPDATA%\jupyter\kernels`` (Win)
+
+
+
diff --git a/docs/jupyter/notebooks/CbmRoot.ipynb b/docs/jupyter/notebooks/CbmRoot.ipynb
new file mode 100644
index 0000000000..693fbb6dcc
--- /dev/null
+++ b/docs/jupyter/notebooks/CbmRoot.ipynb
@@ -0,0 +1,797 @@
+{
+ "cells": [
+ {
+ "cell_type": "markdown",
+ "id": "2126cfd4",
+ "metadata": {},
+ "source": [
+ "# CbmRoot Notebook\n",
+ "\n",
+ "This notebook provides code snippets how one can run simulations & analysis in a notebook, employing the CbmRoot classes."
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 1,
+ "id": "3bdfe179",
+ "metadata": {},
+ "outputs": [
+ {
+ "name": "stdout",
+ "output_type": "stream",
+ "text": [
+ "Welcome to JupyROOT 6.26/10\n"
+ ]
+ }
+ ],
+ "source": [
+ "# When using the CbmRootPy kernel, this also loads CbmRoot classes\n",
+ "import ROOT\n",
+ "ROOT.gROOT.SetBatch(True)\n",
+ "ROOT.PyConfig.DisableRootLogon = True\n",
+ "\n",
+ "import os\n"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "id": "eb5ea347",
+ "metadata": {},
+ "source": [
+ "## The transport macro\n",
+ "\n",
+ "Here we have the macro from `macro/run` just with python syntax. Note that all CBM related classes are available in the `ROOT` package/namespace.\n",
+ "\n",
+ "First we define tha macro as function, then we call it in the next cell."
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 2,
+ "id": "4a329503",
+ "metadata": {},
+ "outputs": [
+ {
+ "name": "stdout",
+ "output_type": "stream",
+ "text": [
+ "-I- CbmJupyTransport: Using input file /u/kliemt/CBM/CbmRoot/Install/share/cbmroot/input/urqmd.auau.10gev.centr.root\n",
+ "The file test.tra.root has been deleted.\n",
+ "The file test.par.root has been deleted.\n",
+ "The file test.geo.root has been deleted.\n",
+ "Target is at -44.0cm from origin\n",
+ "Creating a RUN object\n",
+ "Loading the setup\n",
+ "Target being generated in tra macro\n",
+ "Starting the RUN with 1 events\n",
+ "Macro finished successfully.\n",
+ "Real time 13.448765993118286 s, CPU time 13.010000000000002s\n",
+ "MaxMemory 861.9609375\n",
+ "CpuLoad0.9673749998072091\n",
+ "[INFO] File /u/kliemt/CBM/CbmRoot/Install/share/cbmroot/input/urqmd.auau.10gev.centr.root is a ROOT file.\n",
+ "[INFO] UnigenGenerator: Initialising...\n",
+ "[INFO] UnigenGenerator: Mode standard; rotate event plane to zero\n",
+ "[INFO] UnigenGenerator: Open input file /u/kliemt/CBM/CbmRoot/Install/share/cbmroot/input/urqmd.auau.10gev.centr.root\n",
+ "[INFO] UnigenGenerator: Run description\n",
+ "--------------------------------------------------\n",
+ "-I- Run Header -I-\n",
+ "Generator : UrQMD20030\n",
+ "Comment : op 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 \n",
+ "op 0 0 0 0 0 0 1 0 1 0 0 0 0 2 1 \n",
+ "op 0 0 0 1 1 0 0 0 0 0 0 0 0 1 0 \n",
+ "pa 0.1000E+01 0.5200E+00 0.2000E+01 0.3000E+00 0.0000E+00 0.3700E+00 0.0000E+00 0.9300E-01 0.3500E+00 0.2500E+00 0.0000E+00 0.5000E+00 \n",
+ "pa 0.2700E+00 0.4900E+00 0.2700E+00 0.1000E+01 0.1600E+01 0.8500E+00 0.1550E+01 0.0000E+00 0.0000E+00 0.0000E+00 0.0000E+00 0.0000E+00 \n",
+ "pa 0.9000E+00 0.5000E+02 0.1000E+01 0.1000E+01 0.1000E+01 0.1500E+01 0.1600E+01 0.0000E+00 0.2500E+01 0.1000E+00 0.3000E+01 0.2750E+00 \n",
+ "pa 0.4200E+00 0.1080E+01 0.8000E+00 0.5000E+00 0.0000E+00 0.5500E+00 0.5000E+01 0.8000E+00 0.5000E+00 0.8000E+06 0.1000E+01 0.2000E+01 \n",
+ "\n",
+ "Decayer : \n",
+ "Projectile mass : 197\n",
+ "Projectile charge : 79\n",
+ "Projectile momentum (AGeV/c) : 2.06646\n",
+ "Target mass : 197\n",
+ "Target charge : 79\n",
+ "Target momentum (AGeV/c) : -2.06646\n",
+ "Minimal impact parameter (fm) : 0\n",
+ "Maximal impact parameter (fm) : 0\n",
+ "Impact parameter weightning : -1\n",
+ "Minimal azimuthal angle (rad) : 0\n",
+ "Maximal azimuthal angle (rad) : 0\n",
+ "Cross-section (mb) : 0\n",
+ "Requested number of events : 100\n",
+ "--------------------------------------------------\n",
+ "[INFO] UnigenGenerator: sqrt(s_NN) = 4.539 GeV, p_beam = 9.99676 GeV/u\n",
+ "[INFO] UnigenGenerator: Lorentz transformation to lab system: beta -0.910537, gamma 2.41881\n",
+ "[INFO] UnigenGenerator: 100 events in input tree\n",
+ "[INFO] UnigenGenerator: 0 ions registered.\n",
+ "[INFO] Loading CbmGeoSetup from svn repository.\n",
+ "Setup tag: sis100_electron Revision: latest\n",
+ "[WARN] Media file not found for tag using default media.geo\n",
+ "\n",
+ "\n",
+ "[INFO] CbmTransport: Using engine TGeant3\n",
+ "[INFO] Media file used: /u/kliemt/CBM/CbmRoot/Install/share/cbmroot/geometry/media.geo\n",
+ "[INFO] -I- RegisterSetup: Registering CAVE default using cave.geo\n",
+ "[INFO] -I- RegisterSetup: Registering MAGNET v22a using magnet/magnet_v22a.geo.root\n",
+ "[INFO] -I- RegisterSetup: Registering PIPE v21d using pipe/pipe_v21d.geo.root\n",
+ "[INFO] -I- RegisterSetup: Registering PIPE v21i using pipe/pipe_v21i.geo.root\n",
+ "[INFO] -I- RegisterSetup: Registering MVD v20d_tr -ACTIVE- using mvd/mvd_v20d_tr.geo.root\n",
+ "[INFO] -I- RegisterSetup: Registering STS v22d -ACTIVE- using sts/sts_v22d.geo.root\n",
+ "[INFO] -I- RegisterSetup: Registering RICH v23a -ACTIVE- using rich/rich_v23a.geo.root\n",
+ "[INFO] -I- RegisterSetup: Registering TRD v20b_1e -ACTIVE- using trd/trd_v20b_1e.geo.root\n",
+ "[INFO] -I- RegisterSetup: Registering TOF v21a_1e -ACTIVE- using tof/tof_v21a_1e.geo.root\n",
+ "[INFO] -I- RegisterSetup: Registering PSD v23a -ACTIVE- using psd/psd_v23a.geo.root\n",
+ "[INFO] -I- RegisterSetup: Registering FSD v23i -ACTIVE- using fsd/fsd_v23i.geo.root\n",
+ "[INFO] -I- RegisterSetup: Registering PLATFORM v22b using passive/platform_v22b.geo.root\n",
+ "[INFO] Target: Material Gold, standard density, thickness 250 mum, diameter 2.5 cm, position (0, 0, -44) cm, rotation (y) 0 rad\n",
+ "[INFO] CbmTransport: Register magnetic field\n",
+ "[INFO] 0\n",
+ "[INFO] Filename is /u/kliemt/CBM/CbmRoot/Install/share/cbmroot/input/field_v22c.root\n",
+ "======================================================\n",
+ "---- CbmFieldMap : field_v22c\n",
+ "----\n",
+ "---- Field type : Map sym3\n",
+ "----\n",
+ "---- Field map grid : \n",
+ "---- x = 0.000 to 0.000 cm, 0 grid points, dx = 0.000 cm\n",
+ "---- y = 0.000 to 0.000 cm, 0 grid points, dy = 0.000 cm\n",
+ "---- z = 0.000 to 0.000 cm, 0 grid points, dz = 0.000 cm\n",
+ "\n",
+ "---- Field centre position: ( 0.000, 0.000, 0.000) cm\n",
+ "---- Field scaling factor: 1.000\n",
+ "----\n",
+ "---- Field at origin is ( 0.000, 0.000, 0.000) kG\n",
+ "======================================================\n",
+ "\n",
+ "[INFO] ----- Settings for event generator\n",
+ "[INFO] Beam profile:\n",
+ "\t x position mean 0 cm, sigma 0.1 cm\n",
+ "\t y position mean 0 cm, sigma 0.1 cm\n",
+ "\t Focal plane: z = 0 cm\n",
+ "\t x-z angle 0 rad (fixed)\n",
+ "\t y-z angle 0 rad (fixed)\n",
+ "[INFO] Target: Material Gold, standard density, thickness 250 mum, diameter 2.5 cm, position (0, 0, -44) cm, rotation (y) 0 rad\n",
+ "[INFO] Vertex smearing along beam ON\n",
+ "[INFO] Random event plane angle between 0 and 6.28319 rad\n",
+ "[INFO] Number of generators 1\n",
+ "OBJ: CbmUnigenGenerator\tUnigenGenerator\tCBM generator\n",
+ "[INFO] ----- End settings for event generator\n",
+ "\n",
+ "[INFO] FairRootFileSink initialized.\n",
+ "[INFO] - cbmroot_0\n",
+ "[INFO] - test.tra.root\n",
+ "[INFO] ============== FairRunSim: Initialising simulation run ==============\n",
+ "[INFO] FairGeoMedia: Read media \n",
+ "\n",
+ "************************************************************* \n",
+ " initialisation for run id 1720175896\n",
+ "************************************************************* \n",
+ "[INFO] CbmFieldMap: Reading field map from ROOT file /u/kliemt/CBM/CbmRoot/Install/share/cbmroot/input/field_v22c.root\n",
+ "======================================================\n",
+ "---- CbmFieldMap : field_v22c\n",
+ "----\n",
+ "---- Field type : Map sym3\n",
+ "----\n",
+ "---- Field map grid : \n",
+ "---- x = 0.000 to 302.0 cm, 152 grid points, dx = 2.000 cm\n",
+ "---- y = 0.000 to 302.0 cm, 152 grid points, dy = 2.000 cm\n",
+ "---- z = 0.000 to 502.0 cm, 252 grid points, dz = 2.000 cm\n",
+ "\n",
+ "---- Field centre position: ( 0.000, 0.000, 0.000) cm\n",
+ "---- Field scaling factor: 1.000\n",
+ "----\n",
+ "---- Field at origin is ( 0.004120, -10.95, -0.005054) kG\n",
+ "======================================================\n",
+ "[WARN] FairField::FillParContainer Should be implemented in User class\n",
+ "\n",
+ "[INFO] CbmTransport: Configuring VMC...\n",
+ "[INFO] CbmTransport: Create TGeant3TGeo\n",
+ "\n",
+ "=============================================================\n",
+ " Virtual Monte Carlo Library\n",
+ " Version 2.0 ( 10 February 2022 )\n",
+ "=============================================================\n",
+ "\n",
+ "=============================================================\n",
+ " Geant3 Virtual Monte Carlo \n",
+ " Version 4.1 ( 17 March 2022 )\n",
+ " WWW : https://vmc-project.github.io/\n",
+ "=============================================================\n",
+ "\n",
+ "\n",
+ " MZSTOR. ZEBRA table base TAB(0) in /MZCC/ at adr 123850191 761CDCF HEX\n",
+ "\n",
+ " MZSTOR. Initialize Store 0 in /GCBANK/\n",
+ " with Store/Table at absolute adrs 118404533 123850191\n",
+ " HEX 70EB5B5 761CDCF\n",
+ " HEX FFACE5D2 0\n",
+ " relative adrs -5446190 0\n",
+ " with 1 Str. in 2 Links in 5300 Low words in 4999970 words.\n",
+ " This store has a fence of 16 words.\n",
+ "\n",
+ " MZLOGL. Set Log Level 0 for store 0\n",
+ "1***** GEANT Version 3.21/11 Released on 100298\n",
+ "0***** Correction Cradle Version 0.1100\n",
+ "\n",
+ " MZDIV. Initialize Division Constant in Store 0\n",
+ " NW/NWMAX= 20004000000, MODE/KIND= 1 2\n",
+ " Division 20 initialized.\n",
+ "\n",
+ " MZLINK. Initialize Link Area /GCLINK/ for Store 0 NL/NS= 20 20\n",
+ "\n",
+ " MZLINK. Initialize Link Area /GCSLNK/ for Store 0 NL/NS= 100 100\n",
+ "[INFO] : Configuring global VMC settings\n",
+ "[INFO] : Configuring Geant3\n",
+ "[WARN] UnigenGenerator: Already initialised!\n",
+ "[INFO] Constructing MAGNET from ROOT file /u/kliemt/CBM/CbmRoot/Install/share/cbmroot/geometry/magnet/magnet_v22a.geo.root\n",
+ "[INFO] Constructing Pipe geometry from ROOT file /u/kliemt/CBM/CbmRoot/Install/share/cbmroot/geometry/pipe/pipe_v21d.geo.root\n",
+ "[INFO] Importing Pipe geometry from ROOT file /u/kliemt/CBM/CbmRoot/Install/share/cbmroot/geometry/pipe/pipe_v21i.geo.root\n",
+ "[INFO] Constructing MVD geometry from ROOT file /u/kliemt/CBM/CbmRoot/Install/share/cbmroot/geometry/mvd/mvd_v20d_tr.geo.root\n",
+ "[INFO] Importing STS geometry from ROOT file /u/kliemt/CBM/CbmRoot/Install/share/cbmroot/geometry/sts/sts_v22d.geo.root\n",
+ "[INFO] Importing RICH geometry from ROOT file /u/kliemt/CBM/CbmRoot/Install/share/cbmroot/geometry/rich/rich_v23a.geo.root\n",
+ "[INFO] Importing TRD geometry from ROOT file /u/kliemt/CBM/CbmRoot/Install/share/cbmroot/geometry/trd/trd_v20b_1e.geo.root\n",
+ "[INFO] Importing TOF geometry from ROOT file /u/kliemt/CBM/CbmRoot/Install/share/cbmroot/geometry/tof/tof_v21a_1e.geo.root\n",
+ "[INFO] Importing PSD geometry from ROOT file /u/kliemt/CBM/CbmRoot/Install/share/cbmroot/geometry/psd/psd_v23a.geo.root\n",
+ "[INFO] Importing FSD geometry from ROOT file /u/kliemt/CBM/CbmRoot/Install/share/cbmroot/geometry/fsd/fsd_v23i.geo.root\n",
+ "[INFO] Importing Platform geometry from ROOT file /u/kliemt/CBM/CbmRoot/Install/share/cbmroot/geometry/passive/platform_v22b.geo.root\n",
+ "\n",
+ "[INFO] Target: Constructing geometry...\n",
+ "[INFO] Target: Use material Gold, z = 79\n",
+ "[INFO] Target: Mother node is pipevac1_0\n",
+ "\n",
+ "[INFO] TGeometry will be imported to VMC\n",
+ "\n",
+ "0*** GSTMED *** Warning, medium = 2, value of EPSIL= 0.000E+00 reset to 1 micron\n",
+ "0*** GSTMED *** Warning, medium = 8, value of EPSIL= 0.000E+00 reset to 1 micron\n",
+ "0*** GSTMED *** Warning, medium = 9, value of EPSIL= 0.000E+00 reset to 1 micron\n",
+ "0*** GSTMED *** Warning, medium = 10, value of EPSIL= 0.000E+00 reset to 1 micron\n",
+ "0*** GSTMED *** Warning, medium = 11, value of EPSIL= 0.000E+00 reset to 1 micron\n",
+ "[INFO] CbmRich::ConstructOpGeometry()\n",
+ "[INFO] CbmRich::SetRichGlassPropertiesForGeant4() Transport engine:TGeant3\n",
+ "[INFO] CbmRich::SetRichGlassPropertiesForGeant4() fIsGeant4 is false. No need to set RICH glass properties. Return.\n",
+ "[INFO] FairMCApplication::InitGeometry: 0\n",
+ "[INFO] \n",
+ "[INFO] ==========================================================\n",
+ "[INFO] Initialising STS Setup \n",
+ "\n",
+ "[INFO] STS: Reading geometry from TGeoManager FAIRGeom\n",
+ "[INFO] STS: STS top node is sts_v22d_0\n",
+ "[INFO] STS: Elements in setup: \n",
+ "[INFO] units 20\n",
+ "[INFO] ladders 106\n",
+ "[INFO] halfladders 212\n",
+ "[INFO] modules 876\n",
+ "[INFO] sensors 876\n",
+ "[INFO] Sensor in map: 876 in vector 876\n",
+ "[INFO] STS: Setup contains 8 stations objects.\n",
+ "[INFO] ==========================================================\n",
+ "\n",
+ "[INFO] \n",
+ "[INFO] STSMC: Address map initialised with 876 sensors. \n",
+ "[INFO] CbmRichDigiMapManager is initialized\n",
+ "[INFO] fPixelPathToAddressMap.size() = 75264\n",
+ "[INFO] fPixelAddressToDataMap.size() = 75264\n",
+ "[INFO] fPmtPathToIdMap.size() = 1176\n",
+ "[INFO] fPmtIdToDataMap.size() = 1176\n",
+ "Mixture TRDgas Aeff=124.791 Zeff=51.401 rho=0.004944 radlen=1792.89 intlen=33993.1 index=243500301\n",
+ " Element #0 : C Z= 6.00 A= 12.01 w= 0.015\n",
+ " Element #1 : O Z= 8.00 A= 15.99 w= 0.041\n",
+ " Element #2 : XE Z= 54.00 A=131.29 w= 0.944\n",
+ "[INFO] Using special parameters for TRDgas\n",
+ "[INFO] Inspect node 0 magnet_v22a_0\n",
+ "[INFO] Inspect node 1 pipe_v21d_0\n",
+ "[INFO] Inspect node 2 pipe_v21i_0\n",
+ "[INFO] Inspect node 3 sts_v22d_0\n",
+ "[INFO] Inspect node 4 rich_v23a_0\n",
+ "[INFO] Inspect node 5 trd_v20b_1e_0\n",
+ "[INFO] Inspect node 6 tof_v21a_1e_0\n",
+ "[INFO] Found TOF geometry tof_v21a_1e_0\n",
+ "[INFO] CbmTofGeoHandler::CheckGeometryVersion: Found TOF geometry tof_v21a_1e_0, treat as Id 21a \n",
+ "<I> V21a module mask 0x0fdfffff\n",
+ "[INFO] Initialize Tasks--------------------------\n",
+ "[INFO] MCEventFilter: Add branch MCTrack\n",
+ "[INFO] MCEventFilter: Add branch MvdPoint\n",
+ "[INFO] MCEventFilter: Add branch StsPoint\n",
+ "[INFO] MCEventFilter: Add branch RichPoint\n",
+ "[INFO] Branch: MuchPoint not found in Tree.\n",
+ "[INFO] MCEventFilter: Add branch TrdPoint\n",
+ "[INFO] MCEventFilter: Add branch TofPoint\n",
+ "[INFO] MCEventFilter: Add branch FsdPoint\n",
+ "[INFO] MCEventFilter: Add branch PsdPoint\n",
+ "[INFO] Simulation RunID: 1720175896\n",
+ "\n",
+ " Calculating cross section tables, see gphysi.dat for more information\n",
+ "\n",
+ " Cross section calculation concluded successfully\n",
+ "[INFO] Monte Carlo Engine Initialisation with: TGeant3TGeo\n",
+ "[INFO] CbmTransport: Set decay modes for pi0 and eta\n",
+ "\n",
+ " *** GSDK ***: Warning, redefinition of decay for particle:\n",
+ "0Part Options Mass Charge Life time User words\n",
+ "\n",
+ " 17 ETA 3 0.5479E+00 0. 0.54850E-18\n",
+ "\n",
+ " *** GSDK ***: Warning, redefinition of decay for particle:\n",
+ "0Part Options Mass Charge Life time User words\n",
+ "\n",
+ " 7 PION 0 3 0.1350E+00 0. 0.84000E-16\n",
+ "[INFO] create CbmFieldPar container CbmFieldPar\n",
+ "[INFO] *** FairBaseParSet written to ROOT file version: 1\n",
+ "[INFO] *** FairGeoParSet written to ROOT file version: 1\n",
+ "[INFO] *** CbmGeoPassivePar written to ROOT file version: 1\n",
+ "[INFO] *** CbmFieldPar written to ROOT file version: 1\n",
+ "--------------------------------------------------------------------------------\n",
+ "-------------- actual containers in runtime database -------------------------\n",
+ "FairBaseParSet class for parameter io\n",
+ "FairGeoParSet class for Geo parameter\n",
+ "CbmGeoPassivePar Passive Geometry Parameters\n",
+ "CbmFieldPar Field parameter container\n",
+ "-------------- runs, versions ------------------------------------------------\n",
+ "run id\n",
+ " container 1st-inp 2nd-inp output\n",
+ "run: 1720175896\n",
+ " FairBaseParSet 1720175896 -1 1\n",
+ " FairGeoParSet 1720175896 -1 1\n",
+ " CbmGeoPassivePar 1720175896 -1 1\n",
+ " CbmFieldPar -1 -1 1\n",
+ "-------------- input/output --------------------------------------------------\n",
+ "first input: none\n",
+ "second input: none\n",
+ "output:\n",
+ "OBJ: FairParRootFile\ttest.par.root\t : 0 at: 0x137274f0\n",
+ "Root file I/O test.par.root is open\n",
+ "detector I/Os: FairGenericParIo\n",
+ "[INFO] Here I am\n",
+ "[INFO] Write Geant3Settings\n",
+ " **** GTRIGI: IEVENT= 1 IDEVT= 1 Random Seeds = ********** 0\n",
+ "\n",
+ "[INFO] EventGenerator: Generate event 1\n",
+ "[INFO] EventGenerator: Rotate event by 5.1107 rad\n",
+ "[INFO] UnigenGenerator: Event ID 1, particles 963, primaries 963, b = 0 fm, phi (source) = 0 rad , phi (generated) = -0 rad\n",
+ "[INFO] EventGenerator: Event ID 1, tracks 963, vertex (0.00183597, -0.272284, -44.0027) cm\n",
+ "[INFO] EventGenerator: Beam angle (0, 0) rad, event plane angle 5.1107 rad (total 5.1107 rad) change\n",
+ "[INFO] CbmFsdGeoHandler has initialized maps\n",
+ "[INFO] fUnitIdToSpecsMap.size() = 1\n",
+ "[INFO] fModuleIdToSpecsMap.size() = 372\n",
+ "\n",
+ " *** GTRACK *** More than 10000 steps, tracking abandoned!\n",
+ " =====> TRACK 1 STACK NR 1 NTMULT= 6622 Cerenkov TOFG = 8.002 NS\n",
+ " X Y Z R NAME NUMBER SLENG STEP DESTEP GEKIN MECHANISMS\n",
+ " -8.0599 5.8851 195.6469 9.9798 rich 1 7.9893 0.0003 0.0 eV 6.272 eV NEXT SCOR STOP\n",
+ " IEVENT 1 IDEVT 1 Random Seeds ********** 0 Time of flight 8.002 ns\n",
+ "\n",
+ "\n",
+ " *** GTRACK *** More than 10000 steps, tracking abandoned!\n",
+ " =====> TRACK 1 STACK NR 1 NTMULT= 6646 Cerenkov TOFG = 7.613 NS\n",
+ " X Y Z R NAME NUMBER SLENG STEP DESTEP GEKIN MECHANISMS\n",
+ " -7.6363 5.5571 184.0066 9.4443 rich 1 7.3858 0.0003 0.0 eV 4.169 eV NEXT SCOR STOP\n",
+ " IEVENT 1 IDEVT 1 Random Seeds ********** 0 Time of flight 7.613 ns\n",
+ "\n",
+ "\n",
+ " *** GTRACK *** More than 10000 steps, tracking abandoned!\n",
+ " =====> TRACK 1 STACK NR 1 NTMULT= 6700 Cerenkov TOFG = 6.891 NS\n",
+ " X Y Z R NAME NUMBER SLENG STEP DESTEP GEKIN MECHANISMS\n",
+ " -6.7460 5.0904 162.4149 8.4511 rich 1 5.2554 0.0002 0.0 eV 6.509 eV NEXT SCOR STOP\n",
+ " IEVENT 1 IDEVT 1 Random Seeds ********** 0 Time of flight 6.891 ns\n",
+ "\n",
+ " GTREVE_ROOT : Transporting primary track No 900\n",
+ " GTREVE_ROOT : Transporting primary track No 800\n",
+ " GTREVE_ROOT : Transporting primary track No 700\n",
+ " GTREVE_ROOT : Transporting primary track No 600\n",
+ " GTREVE_ROOT : Transporting primary track No 500\n",
+ " GTREVE_ROOT : Transporting primary track No 400\n",
+ " GTREVE_ROOT : Transporting primary track No 300\n",
+ " GTREVE_ROOT : Transporting primary track No 200\n",
+ " GTREVE_ROOT : Transporting primary track No 100\n",
+ "[INFO] CbmStack: 129478 particles, 14205 written to output.\n",
+ "[INFO] MCEventFilter: MCTracks 14205, Points: MVD 1583 STS 3722 RICH 6609 TRD 1883 TOF 8246 FSD 397 PSD 2829 \n",
+ "[INFO] MCEventFilter: Current event 1 selected for output\n",
+ "[INFO] MVD: 1583 points registered in this event.\n",
+ "[INFO] STSMC: 3722 points registered in this event.\n",
+ "[INFO] RICH: 6609 points registered in this event.\n",
+ "[INFO] TRD: 1883 points registered in this event.\n",
+ "[INFO] TOF: 8246 points registered in this event.\n",
+ "[INFO] PSDMC: 2829 points registered in this event.\n",
+ "[INFO] FSDMC: 397 points registered in this event.\n",
+ "\n",
+ "[INFO] MCEventFilter: Number of input events 1\n",
+ "[INFO] MCEventFilter: Number of output events 1 = 100 %\n",
+ "\n",
+ "\n",
+ "[INFO] CbmTransport: Run finished successfully.\n",
+ "[INFO] CbmTransport: Wall time for Init : 2.15356 s \n",
+ "[INFO] CbmTransport: Wall time for Run : 6.61636 s (6.61636 s / event)\n",
+ "[INFO] CbmTransport: Output file : test.tra.root\n",
+ "[INFO] CbmTransport: Parameter file : test.par.root\n",
+ "[INFO] CbmTransport: Geometry file : test.geo.root\n",
+ "\n",
+ "\n"
+ ]
+ },
+ {
+ "name": "stderr",
+ "output_type": "stream",
+ "text": [
+ "Info in <TGeoManager::TGeoManager>: Geometry FAIRGeom, FAIR geometry created\n",
+ "Info in <TGeoManager::SetTopVolume>: Top volume is cave. Master volume is cave\n",
+ "Info in <TGeoNavigator::BuildCache>: --- Maximum geometry depth set to 100\n",
+ "Warning in <TGeoMaterial::ctor>: Material MAG_Vacuum defined with fractional Z=0.500000\n",
+ "Info in <TGeoManager::CheckGeometry>: Fixing runtime shapes...\n",
+ "Info in <TGeoManager::CheckGeometry>: ...Nothing to fix\n",
+ "Info in <TGeoManager::CloseGeometry>: Counting nodes...\n",
+ "Info in <TGeoManager::Voxelize>: Voxelizing...\n",
+ "Info in <TGeoManager::CloseGeometry>: Building cache...\n",
+ "Info in <TGeoManager::CountLevels>: max level = 10, max placements = 372\n",
+ "Info in <TGeoManager::CloseGeometry>: 577444 nodes/ 1092 volume UID's in FAIR geometry\n",
+ "Info in <TGeoManager::CloseGeometry>: ----------------modeler ready----------------\n",
+ "Error in <TExMap::Remove>: key 166863080 not found at 3052\n",
+ "Error in <TExMap::Remove>: key 166863280 not found at 3252\n",
+ "Error in <TExMap::Remove>: key 166863472 not found at 3446\n",
+ "Error in <TExMap::Remove>: key 166863664 not found at 3640\n",
+ "Error in <TExMap::Remove>: key 166863856 not found at 3834\n",
+ "Error in <TExMap::Remove>: key 166864048 not found at 4021\n",
+ "Error in <TExMap::Remove>: key 166864240 not found at 4213\n",
+ "Error in <TExMap::Remove>: key 166864432 not found at 4404\n",
+ "Error in <TExMap::Remove>: key 166864624 not found at 4597\n",
+ "Error in <TExMap::Remove>: key 166864816 not found at 4788\n",
+ "Error in <TExMap::Remove>: key 166865008 not found at 4980\n",
+ "Error in <TExMap::Remove>: key 166865200 not found at 5173\n",
+ "Error in <TExMap::Remove>: key 166865352 not found at 5325\n",
+ "Error in <TExMap::Remove>: key 166865552 not found at 53\n",
+ "Error in <TExMap::Remove>: key 166865744 not found at 245\n",
+ "Error in <TExMap::Remove>: key 166865936 not found at 438\n",
+ "Error in <TExMap::Remove>: key 166866128 not found at 630\n",
+ "Error in <TExMap::Remove>: key 166866320 not found at 821\n",
+ "Error in <TExMap::Remove>: key 166866512 not found at 1014\n",
+ "Error in <TExMap::Remove>: key 166866704 not found at 1205\n",
+ "Error in <TExMap::Remove>: key 166866896 not found at 1397\n",
+ "Error in <TExMap::Remove>: key 166867088 not found at 1589\n",
+ "Error in <TExMap::Remove>: key 166867352 not found at 1853\n",
+ "Error in <TExMap::Remove>: key 166870864 not found at 5365\n",
+ "Error in <TExMap::Remove>: key 166871016 not found at 46\n",
+ "Error in <TExMap::Remove>: key 166873936 not found at 2966\n",
+ "Error in <TExMap::Remove>: key 166874024 not found at 3054\n",
+ "Error in <TExMap::Remove>: key 166874112 not found at 3142\n",
+ "Error in <TExMap::Remove>: key 166874200 not found at 3230\n",
+ "Error in <TExMap::Remove>: key 166874720 not found at 3750\n",
+ "Error in <TExMap::Remove>: key 166874808 not found at 3838\n",
+ "Error in <TExMap::Remove>: key 166874896 not found at 3926\n",
+ "Error in <TExMap::Remove>: key 166874984 not found at 4014\n",
+ "Error in <TExMap::Remove>: key 166875072 not found at 4104\n",
+ "Error in <TExMap::Remove>: key 166875592 not found at 4622\n",
+ "Error in <TExMap::Remove>: key 166875680 not found at 4711\n",
+ "Error in <TExMap::Remove>: key 166875768 not found at 4798\n",
+ "Error in <TExMap::Remove>: key 166875856 not found at 4886\n",
+ "Error in <TExMap::Remove>: key 166875944 not found at 4975\n",
+ "Error in <TExMap::Remove>: key 166876032 not found at 5062\n",
+ "Error in <TExMap::Remove>: key 166876552 not found at 111\n",
+ "Error in <TExMap::Remove>: key 166876640 not found at 200\n",
+ "Error in <TExMap::Remove>: key 166876728 not found at 287\n",
+ "Error in <TExMap::Remove>: key 166876816 not found at 376\n",
+ "Error in <TExMap::Remove>: key 166876904 not found at 463\n",
+ "Error in <TExMap::Remove>: key 166876992 not found at 552\n",
+ "Error in <TExMap::Remove>: key 166877512 not found at 1074\n",
+ "Error in <TExMap::Remove>: key 166877600 not found at 1161\n",
+ "Error in <TExMap::Remove>: key 166877688 not found at 1247\n",
+ "Error in <TExMap::Remove>: key 166877776 not found at 1336\n",
+ "Error in <TExMap::Remove>: key 166877864 not found at 1424\n",
+ "Error in <TExMap::Remove>: key 166878384 not found at 1943\n",
+ "Error in <TExMap::Remove>: key 166878472 not found at 2031\n",
+ "Error in <TExMap::Remove>: key 166878560 not found at 2119\n",
+ "Error in <TExMap::Remove>: key 166878648 not found at 2207\n",
+ "Error in <TExMap::Remove>: key 166878736 not found at 2295\n",
+ "Error in <TExMap::Remove>: key 166878824 not found at 2383\n",
+ "Error in <TExMap::Remove>: key 166878912 not found at 2472\n",
+ "Error in <TExMap::Remove>: key 166879432 not found at 2992\n",
+ "Error in <TExMap::Remove>: key 166879520 not found at 3079\n",
+ "Error in <TExMap::Remove>: key 166879608 not found at 3168\n",
+ "Error in <TExMap::Remove>: key 166880128 not found at 3687\n",
+ "Error in <TExMap::Remove>: key 166880216 not found at 3776\n",
+ "Error in <TExMap::Remove>: key 166880304 not found at 3863\n",
+ "Error in <TExMap::Remove>: key 166880392 not found at 3951\n",
+ "Error in <TExMap::Remove>: key 166880912 not found at 4471\n",
+ "Error in <TExMap::Remove>: key 166881000 not found at 4559\n",
+ "Error in <TExMap::Remove>: key 166881088 not found at 4647\n",
+ "Error in <TExMap::Remove>: key 166881240 not found at 4799\n",
+ "Error in <TExMap::Remove>: key 166882440 not found at 528\n",
+ "Error in <TExMap::Remove>: key 166882528 not found at 616\n",
+ "Error in <TExMap::Remove>: key 166882616 not found at 705\n",
+ "Error in <TExMap::Remove>: key 173113976 not found at 596\n",
+ "Error in <TExMap::Remove>: key 173114064 not found at 683\n",
+ "Error in <TExMap::Remove>: key 243369256 not found at 2764\n",
+ "Error in <TExMap::Remove>: key 243369408 not found at 2917\n",
+ "Error in <TExMap::Remove>: key 243369560 not found at 3068\n",
+ "Error in <TExMap::Remove>: key 243369712 not found at 3222\n",
+ "Error in <TExMap::Remove>: key 243369864 not found at 3372\n",
+ "Error in <TExMap::Remove>: key 245541160 not found at 2682\n",
+ "Error in <TExMap::Remove>: key 245541360 not found at 2881\n",
+ "Error in <TExMap::Remove>: key 245541552 not found at 3074\n",
+ "Error in <TExMap::Remove>: key 245541744 not found at 3265\n",
+ "Error in <TExMap::Remove>: key 245541936 not found at 3461\n",
+ "Error in <TExMap::Remove>: key 245542128 not found at 3649\n",
+ "Error in <TExMap::Remove>: key 245542320 not found at 3842\n",
+ "Error in <TExMap::Remove>: key 245542512 not found at 4033\n",
+ "Error in <TExMap::Remove>: key 245542704 not found at 4226\n",
+ "Error in <TExMap::Remove>: key 245542896 not found at 4417\n",
+ "Error in <TExMap::Remove>: key 245543088 not found at 4609\n",
+ "Error in <TExMap::Remove>: key 245543280 not found at 4801\n",
+ "Error in <TExMap::Remove>: key 245543472 not found at 4993\n",
+ "Error in <TExMap::Remove>: key 245543664 not found at 5185\n",
+ "Error in <TExMap::Remove>: key 245543856 not found at 5377\n",
+ "Error in <TExMap::Remove>: key 245544048 not found at 99\n",
+ "Error in <TExMap::Remove>: key 245544240 not found at 290\n",
+ "Error in <TExMap::Remove>: key 245544432 not found at 486\n",
+ "Error in <TExMap::Remove>: key 245544624 not found at 674\n",
+ "Error in <TExMap::Remove>: key 245544816 not found at 866\n",
+ "Error in <TExMap::Remove>: key 245545008 not found at 1058\n",
+ "Error in <TExMap::Remove>: key 245545200 not found at 1250\n",
+ "Error in <TExMap::Remove>: key 245545392 not found at 1442\n",
+ "Error in <TExMap::Remove>: key 245545584 not found at 1635\n",
+ "Error in <TExMap::Remove>: key 245545776 not found at 1826\n",
+ "Error in <TExMap::Remove>: key 245545968 not found at 2018\n",
+ "Error in <TExMap::Remove>: key 245546160 not found at 2214\n",
+ "Error in <TExMap::Remove>: key 245546352 not found at 2402\n",
+ "Error in <TExMap::Remove>: key 245546544 not found at 2596\n",
+ "Error in <TExMap::Remove>: key 245546736 not found at 2786\n",
+ "Error in <TExMap::Remove>: key 245546928 not found at 2978\n",
+ "Error in <TExMap::Remove>: key 245547120 not found at 3170\n",
+ "Error in <TExMap::Remove>: key 245547312 not found at 3362\n",
+ "Error in <TExMap::Remove>: key 245547504 not found at 3554\n",
+ "Error in <TExMap::Remove>: key 245547696 not found at 3750\n",
+ "Error in <TExMap::Remove>: key 245547888 not found at 3940\n",
+ "Error in <TExMap::Remove>: key 245548080 not found at 4130\n",
+ "Error in <TExMap::Remove>: key 245548272 not found at 4323\n",
+ "Error in <TExMap::Remove>: key 245548464 not found at 4514\n",
+ "Error in <TExMap::Remove>: key 245548656 not found at 4708\n",
+ "Error in <TExMap::Remove>: key 245548848 not found at 4898\n",
+ "Error in <TExMap::Remove>: key 245549040 not found at 5090\n",
+ "Error in <TExMap::Remove>: key 245549232 not found at 5282\n",
+ "Error in <TExMap::Remove>: key 245549424 not found at 3\n",
+ "Error in <TExMap::Remove>: key 245549664 not found at 243\n",
+ "Error in <TExMap::Remove>: key 245549856 not found at 438\n",
+ "Error in <TExMap::Remove>: key 245550048 not found at 627\n",
+ "Error in <TExMap::Remove>: key 245550240 not found at 821\n",
+ "Error in <TExMap::Remove>: key 245550432 not found at 1014\n",
+ "Error in <TExMap::Remove>: key 245550672 not found at 1252\n",
+ "Error in <TExMap::Remove>: key 246287064 not found at 4532\n",
+ "Error in <TExMap::Remove>: key 246287200 not found at 4668\n",
+ "Error in <TExMap::Remove>: key 246287328 not found at 4793\n",
+ "Error in <TExMap::Remove>: key 246287456 not found at 4921\n",
+ "Error in <TExMap::Remove>: key 246287584 not found at 5049\n",
+ "Error in <TExMap::Remove>: key 246287712 not found at 5177\n",
+ "Error in <TExMap::Remove>: key 246287840 not found at 5306\n",
+ "Error in <TExMap::Remove>: key 246287968 not found at 5433\n",
+ "Error in <TExMap::Remove>: key 246288096 not found at 90\n",
+ "Error in <TExMap::Remove>: key 246288272 not found at 267\n"
+ ]
+ }
+ ],
+ "source": [
+ "# /* Copyright (C) 2020 GSI Helmholtzzentrum fuer Schwerionenforschung, Darmstadt\n",
+ "# SPDX-License-Identifier: GPL-3.0-only\n",
+ "# Authors: Volker Friese [original file committer], Ralf Kliemt */\n",
+ "ROOT.gROOT.Reset()\n",
+ "\n",
+ "input = \"\"\n",
+ "nEvents = 1\n",
+ "output = \"test\" \n",
+ "setup = \"sis100_electron\"\n",
+ "randomSeed = 0\n",
+ "overwrite = True\n",
+ "\n",
+ "# --- Logger settings ----------------------------------------------------\n",
+ "ROOT.FairLogger.GetLogger().SetLogScreenLevel(\"INFO\")\n",
+ "ROOT.FairLogger.GetLogger().SetLogVerbosityLevel(\"LOW\")\n",
+ "\n",
+ "# ----- Environment --------------------------------------------------\n",
+ "myName = \"CbmJupyTransport\" # this macro's name for screen output\n",
+ "srcDir = ROOT.gSystem.Getenv(\"VMCWORKDIR\") # top source directory\n",
+ "\n",
+ "# ----- Input file ---------------------------------------------------\n",
+ "# Use default input if not specified by the user\n",
+ "defaultInput = srcDir + \"/input/urqmd.auau.10gev.centr.root\"\n",
+ "inFile = input if input != \"\" else defaultInput\n",
+ "print(f\"-I- {myName}: Using input file {inFile}\")\n",
+ "\n",
+ "# ----- Output files -------------------------------------------------\n",
+ "dataset = output\n",
+ "outFile = dataset + \".tra.root\"\n",
+ "parFile = dataset + \".par.root\"\n",
+ "geoFile = dataset + \".geo.root\"\n",
+ "if overwrite:\n",
+ " if os.path.exists(outFile):\n",
+ " os.remove(outFile)\n",
+ " print(f\"The file {outFile} has been deleted.\")\n",
+ " if os.path.exists(parFile):\n",
+ " os.remove(parFile)\n",
+ " print(f\"The file {parFile} has been deleted.\")\n",
+ " if os.path.exists(geoFile):\n",
+ " os.remove(geoFile)\n",
+ " print(f\"The file {geoFile} has been deleted.\")\n",
+ "\n",
+ "# ----- Target properties --------------------------------------------\n",
+ "targetMaterial = \"Gold\"\n",
+ "targetThickness = 0.025 # in cm\n",
+ "targetDiameter = 2.5 # in cm\n",
+ "targetZpos = -44.0\n",
+ "# The target is at -44 cm from the centre of the magnet.\n",
+ "print(f\"Target is at {targetZpos}cm from origin\")\n",
+ "\n",
+ "# ----- Beam properties ----------------------------------------------\n",
+ "beamPosX = 0.\n",
+ "beamPosY = 0.\n",
+ "beamSigmaX = 0.1 # cm\n",
+ "beamSigmaY = 0.1 # cm\n",
+ "# ----- Event plane rotation -----------------------------------------\n",
+ "rotateEvents = True\n",
+ "\n",
+ "# --- Transport run preparation-------------------------------------------\n",
+ "print(\"Creating a RUN object\")\n",
+ "timer = ROOT.TStopwatch()\n",
+ "timer.Start()\n",
+ "run = ROOT.CbmTransport()\n",
+ "engine = ROOT.kGeant3\n",
+ "run.SetEngine(engine)\n",
+ "if \"pluto\" in inFile.lower():\n",
+ " run.AddInput(inFile, ROOT.kPluto)\n",
+ "else:\n",
+ " run.AddInput(inFile, ROOT.kUnigen)\n",
+ "run.SetOutFileName(outFile, overwrite)\n",
+ "run.SetParFileName(parFile)\n",
+ "run.SetGeoFileName(geoFile)\n",
+ "\n",
+ "print(\"Loading the setup\")\n",
+ "run.LoadSetup(setup)\n",
+ "if not run.GetSetup().IsActive(ROOT.ECbmModuleId.kTarget):\n",
+ " print(\"Target being generated in tra macro\")\n",
+ " run.SetTarget(targetMaterial, targetThickness, targetDiameter, 0, 0, targetZpos)\n",
+ "run.SetBeamPosition(beamPosX, beamPosY, beamSigmaX, beamSigmaY)\n",
+ "if rotateEvents: \n",
+ " run.SetRandomEventPlane()\n",
+ "run.SetRandomSeed(randomSeed)\n",
+ "\n",
+ "# --- Transport run execution -------------------------------------------\n",
+ "print(f\"Starting the RUN with {nEvents} events\")\n",
+ "run.Run(nEvents)\n",
+ "\n",
+ "# ------------------------------------------------------------------------\n",
+ "# ----- Finish -------------------------------------------------------\n",
+ "timer.Stop()\n",
+ "rtime = timer.RealTime()\n",
+ "ctime = timer.CpuTime()\n",
+ "sysInfo = ROOT.FairSystemInfo()\n",
+ "maxMemory = sysInfo.GetMaxMemory()\n",
+ "cpuUsage = ctime / rtime\n",
+ "print(f\"Macro finished successfully.\")\n",
+ "print(f\"Real time {rtime} s, CPU time {ctime}s\")\n",
+ "print(f\"MaxMemory {maxMemory}\")\n",
+ "print(f\"CpuLoad{cpuUsage}\")\n",
+ "ROOT.gROOT.Reset()\n",
+ "# ------------------------------------------------------------------------\n",
+ "# End of macro\n"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "id": "a208d11e",
+ "metadata": {},
+ "source": [
+ "## A quick plot\n",
+ "\n",
+ "Plotting with ROOT is still working. To show a canvas use its `Draw()` function."
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 3,
+ "id": "ef5347b0",
+ "metadata": {},
+ "outputs": [
+ {
+ "data": {
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+ "\n",
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+ " Core.settings.HandleKeys = false;\n",
+ " Core.draw(\"root_plot_1720175905212\", obj, \"\");\n",
+ "}\n",
+ "\n",
+ "function script_load_root_plot_1720175905212(src, on_error) {\n",
+ " let script = document.createElement('script');\n",
+ " script.src = src;\n",
+ " script.onload = function() { display_root_plot_1720175905212(JSROOT); };\n",
+ " script.onerror = function() { script.remove(); on_error(); };\n",
+ " document.head.appendChild(script);\n",
+ "}\n",
+ "\n",
+ "if (typeof requirejs !== 'undefined') {\n",
+ "\n",
+ " // We are in jupyter notebooks, use require.js which should be configured already\n",
+ " requirejs.config({\n",
+ " paths: { 'JSRootCore' : [ 'scripts/JSRoot.core', 'https://root.cern/js/6.1.1/scripts/JSRoot.core.min', 'https://jsroot.gsi.de/6.1.1/scripts/JSRoot.core.min' ] }\n",
+ " })(['JSRootCore'], function(Core) {\n",
+ " display_root_plot_1720175905212(Core);\n",
+ " });\n",
+ "\n",
+ "} else if (typeof JSROOT !== 'undefined') {\n",
+ "\n",
+ " // JSROOT already loaded, just use it\n",
+ " display_root_plot_1720175905212(JSROOT);\n",
+ "\n",
+ "} else {\n",
+ "\n",
+ " // We are in jupyterlab without require.js, directly loading jsroot\n",
+ " // Jupyterlab might be installed in a different base_url so we need to know it.\n",
+ " try {\n",
+ " var base_url = JSON.parse(document.getElementById('jupyter-config-data').innerHTML).baseUrl;\n",
+ " } catch(_) {\n",
+ " var base_url = '/';\n",
+ " }\n",
+ "\n",
+ " // Try loading a local version of requirejs and fallback to cdn if not possible.\n",
+ " script_load_root_plot_1720175905212(base_url + 'static/scripts/JSRoot.core.js', function(){\n",
+ " console.error('Fail to load JSROOT locally, please check your jupyter_notebook_config.py file');\n",
+ " script_load_root_plot_1720175905212('https://root.cern/js/6.1.1/scripts/JSRoot.core.min.js', function(){\n",
+ " document.getElementById(\"root_plot_1720175905212\").innerHTML = \"Failed to load JSROOT\";\n",
+ " });\n",
+ " });\n",
+ "}\n",
+ "\n",
+ "</script>\n"
+ ],
+ "text/plain": [
+ "<IPython.core.display.HTML object>"
+ ]
+ },
+ "metadata": {},
+ "output_type": "display_data"
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+ ],
+ "source": [
+ "ROOT.gROOT.Reset()\n",
+ "%jsroot on\n",
+ "asimfile = ROOT.TFile(\"test.tra.root\")\n",
+ "atree = asimfile.Get(\"cbmsim\")\n",
+ "canvas = ROOT.TCanvas()\n",
+ "atree.Draw(\"StsPoint.fZ\",\"\")\n",
+ "canvas.Draw()\n"
+ ]
+ }
+ ],
+ "metadata": {
+ "@webio": {
+ "lastCommId": null,
+ "lastKernelId": null
+ },
+ "kernelspec": {
+ "display_name": "CbmRoot Python3",
+ "language": "python",
+ "name": "CbmRootPy"
+ },
+ "language_info": {
+ "codemirror_mode": {
+ "name": "ipython",
+ "version": 3
+ },
+ "file_extension": ".py",
+ "mimetype": "text/x-python",
+ "name": "python",
+ "nbconvert_exporter": "python",
+ "pygments_lexer": "ipython3",
+ "version": "3.7.3"
+ },
+ "vscode": {
+ "interpreter": {
+ "hash": "aee8b7b246df8f9039afb4144a1f6fd8d2ca17a180786b69acc140d282b71a49"
+ }
+ }
+ },
+ "nbformat": 4,
+ "nbformat_minor": 5
+}
--
GitLab